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Information for unigene UN20202
| FASTA Sequence |
| Unigene ID: UN20202 | Length: 1275 |
SSR | | AGCCTGTATCTCTCTTTCCTTGAAAACCTTTCTCTCTCTCTCTCCGGTTTGACCCGATAGTTCTCCACCAGAGACGCACCAATCTC
TCTCTCTCTTCGTAGATCTGTTTCGTTTCTTGACGTCATCATCTGAGATCGGAGCCTCTCGTTCTCAGATCCATTCGATTTCTATG
CTCTGCTCCCAGATCCGTCTCGATTCTCGTAATTACAATGGCGGAGACTCTCAAAAAAGAAGACTCAATCACGATTCGAGAGGTCT
GGAACGACAACCTCCTCGAGGAGTTCGCCCTAATCCGTGAGATCGTCGACACGTTCACCTACATCGCCATGGACACGGAGTTCCCC
GGAGTCGTCCTCAAGCCCGTCGAGACCTTCAAGCACAACAGCGACCTCAACTACCGCACCCTCAAGGAGAACGTCGACCTCCTCAA
ACTCATCCAAGTCGGCCTCACCTTCTCCGACGCCGACGGCAACCTCCCCACCCCCGCCCCCGACGGCAAGCCCTGCGTCTGGCAGT
TCAACTTCCGCGAGTTCGACATCGGGGAAGACATCTACGCGAGCGAGTCCATCGAGCTCCTCCGCCAGTGCGGGATCGATTTCAAG
AAGAACGTCGAGAGGGGGATCGACGTGGCTCGGTTCGGTGAGCTCATGATGTCTTCCGGGATCGTGCTGAACGATTCCATCTCGTG
GGTGACGTTCCATGGCGGTTACGATTTCGGTTATTTGGTGAAGCTGCTGACGTGTAAAGAGCTGCCGATGAAGCAGGCGGATTTCT
TCAAGCTGTTGTATGTGTATTTCCCAACGGTTTACGACATCAAGCACTTGATGACGTTCTGTAATGGGCTGTTTGGTGGGCTGAAC
AGGCTCGCGGAGCTTATGGGGGTGGAGAGAGTTGGGGTTTGTCATCAGGCGGGGTCGGATAGCTTGCTTACGTTGGGGTCGTTTAG
GAAGCTCAAGGAGCGTTATTTCACTGGGTCGACTGAGAGATACACTGGTGTTCTGTATGGTCTAGGTGTGGAAGATGGTGGTGGTG
GTACTAATGTTGCTAATTAAGAGGGAAATAATAATAATAAAGGTTAATTATTATTGAGGGGAAGTGGATTATTATTAGGTTTTAGG
ATTTGTGAGTGTGAAGAAGAAGAGACCAATTAGAACTTGTCTATGTGTAAATTGGCAAAAATTGGTTTCAGTAAGTGACTGTTGTG
TCTTTGTTGTTCATCTTTCAGGAAGAAAAAAACCCCTTTGATCAAGTGAGGGGTTGAGTTTATGAATTAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_196657 putative CCR4-associated factor 1-10 [Arabidopsis thaliana] | 1266 | 6e-137 |
| XP_002871445 hypothetical protein ARALYDRAFT_487926 [Arabidopsis lyrata subsp. lyrata] | 1266 | 6e-137 |
| AAK92792 putative CCR4-associated factor [Arabidopsis thaliana] | 1259 | 4e-136 |
| XP_002324905 predicted protein [Populus trichocarpa] | 1069 | 4e-114 |
| ACJ84747 unknown [Medicago truncatula] | 1067 | 7e-114 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LEU4 Probable CCR4-associated factor 1 homolog 10 | 1270 | 8e-139 |
| Q9SKZ2 Probable CCR4-associated factor 1 homolog 7 | 1002 | 1e-107 |
| Q9SAI2 Probable CCR4-associated factor 1 homolog 6 | 989 | 3e-106 |
| Q9S9P2 Probable CCR4-associated factor 1 homolog 2 | 811 | 1e-085 |
| Q9LXM2 Probable CCR4-associated factor 1 homolog 9 | 695 | 4e-072 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9IL41 Predicted protein | 1069 | 3e-114 |
| B7FJ18 Putative uncharacterized protein | 1067 | 5e-114 |
| B9RNX3 Ccr4-associated factor, putative | 1060 | 3e-113 |
| B7FJG2 Putative uncharacterized protein | 1051 | 3e-112 |
| B9SMT7 Ccr4-associated factor, putative | 1043 | 3e-111 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G10960.1 CCR4-NOT transcription complex protein, putative | 1273 | 3e-140 |
| AT2G32070.1 CCR4-NOT transcription complex protein, putative | 1002 | 9e-109 |
| AT1G80780.1 CCR4-NOT transcription complex protein, putative | 989 | 3e-107 |
| AT1G80780.2 CCR4-NOT transcription complex protein, putative | 989 | 3e-107 |
| AT1G15920.2 CCR4-NOT transcription complex protein, putative | 811 | 1e-086 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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