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Information for unigene UN20214

FASTA Sequence
Unigene ID: UN20214Length: 1172 SSR 
GGATTCAAGTCTGTATCGAAGCAATGGAAATCAACGATCGAATCACGTTACTTCCAAGAGAGGCAGTCGAAGCAGTCAGGAGGAGG
AGATCCAGATGTTCTCATGGTGTCCTCAAGTTGTGACGAATCTCTAAGAACACTGGTATTGGGTCCATCCTCATCGGTCAAGATCC
CTACTCCTTGGGATAATAAGGTCAAGGCAACAGGACGACGGTACTTAGTGTCCGATAATAGCTGTGACGGTCTGGTTTGTCTCTAC
CATCCCTTGGAATCCGGTTACGTTGTCAACCCCGCCACAAGATGGTATCGTCCTCTTCCTCTCTCCCGGCTTCAACAACTCATTAT
CAGCCAAGGACAGAGTTACGTTAATACTAAGCACGGCCTCTTTAAGCTTGGATTCGGTAAAGACATAATAATAGGTACTTACAAGC
TTGTTTGGCTGTACAACTCTTCAGAAATAGACCTTGACAACGCTACCACATGCGAAGTTTTCGACTTCGTCTCCAATGCTTGGAGG
TATGTCACTCCCTCTGCTCCTTATCGGGTTGTTGGGGTCGCCGATCCCGTGTTTGTAGATGGTTCGCTTCATTGGCTCACAGATTG
CGAGGAAACCAAACTTGTATCTTTTGATCTCCACACCGAGGCTTTTCAAGTCATCTCTTCTAAACCTCCCTTTCCCGCCAATTCAC
ATGATGATAATCCTTACGCGATGGTCTTGTGCAACCTCGACAACCGTTTGTGCGTGTCGCACATGAAGTCGCCCGACCAAGTGATA
TGGTCCTTGAATTCAGGCAACAAGACATGGGAAAAAATTTACTCCATCGATCTGGTTATGACTTCTATTTTATATGACTGCCCAAC
AGTGTGCGCCTTCCGTCCACTACTATTTTTGGATGCAAAGACCAAGGATAAGAAGAAGAAGAAGAATTTGCTCTTTTATGACAGTG
TGAAAAGTGGATATCTGTTGATACATGACCCCGAAACCCTTTTAGACGATTTTACTTTCAGGGCTGATGTTTCCATGGGATTTCTT
GTTTGTTATTTCCAGACTTTAATCTCTATTTGATTTCTTTCTTTTTTTTTTATTAATGTAACCGTTTCTTTTCTTCCCTTTTGAAT
TTGATATCTTGACCAAAAATTAACTAACTTTGGGTTTTGTCTCTCCAGGCTGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_172436 F-box/LRR and kelch-repeat containing protein [Arabidopsis thaliana]10344e-110
XP_002877486 predicted protein [Arabidopsis lyrata subsp. lyrata]9718e-103
CAA16923 putative protein [Arabidopsis thaliana]8095e-084
XP_002889764 F-box family protein [Arabidopsis lyrata subsp. lyrata]7201e-073
XP_002889905 predicted protein [Arabidopsis lyrata subsp. lyrata]6572e-066

Swiss-Prot top hits (Blast detail)Scoree value
O04488 F-box/LRR-repeat/kelch-repeat protein At1g0965010467e-113
Q9LX89 F-box protein At5g103406192e-063
Q7X7A9 F-box protein At1g112705942e-060
Q9LPW2 Putative F-box/kelch-repeat protein At1g128704176e-040
O80777 F-box protein At2g342804014e-038

TrEMBL top hits (Blast detail)Scoree value
O49464 Putative uncharacterized protein AT4g194608093e-084
Q9M121 Putative uncharacterized protein AT4g016405962e-059
Q9ZSI2 T15B16.15 protein5827e-058
Q9LE79 F5O11.244707e-045
A0MDV8 Putative uncharacterized protein (Fragment)3489e-031

Arabidopsis top hits (Blast detail)Scoree value
AT1G09650.1 F-box family protein10385e-113
AT1G14430.1 glyoxal oxidase-related6811e-071
AT5G10340.1 F-box protein-related / SLF-related6192e-064
AT4G01640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 151 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).6012e-062
AT1G11270.1 F-box family protein5942e-061

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
911  92%
 
101  8%

Unigene MembersMember information