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Information for unigene UN20227
| FASTA Sequence |
| Unigene ID: UN20227 | Length: 1337 |
| SNP | GGGACGCTACAGTTCTCAAGTGAAACAAAGCAACAGAAAGAAGCAAAAAAAAATGGCTATTCCTATAAGATTTTTAACTATAGCTC
TCGTGATCCTCTCCGCGTTACTACTTTCCTCGTCTCTCGGCGGCGTTACAGCGACGGAGACGAAAGGCAATGAGGCGGAAGTGCGC
CGGATGTACGAGCAGTGGCTTGTGGAGAACCGGAAGAACTCTAACGCTCTTGGAGAGAAAGAGAGACGTTTCAATATCTTCAAAGA
CAACTTGAAGTTGATAGAAGCACACAACTCGGTCCCGGACCGGACTTACGAACTCGGATTGACCCGGTTTGCAGATCTAACCGACG
ATGAGTTTCGAGCTATTCACTTAAGGGGGAAGATGGTAAGGACAAGCGATCCAGTGATAGGAGATAGGTACTTGTACAAAGAAGGA
GACGTTTTGCCCGAGGAAGTTGACTGGAGAGAGAAAGGTGCAGTTGTTCCGGTCAAAAATCAAGGAGACTGTGGAGGTTGTTGGGC
GTTCGCGGCGGTTGGAGCCGTGGAGGGTTTAAACAAGATCAAGACAGGAGAGTTAGTATCTTTGTCGGAACAAGAACTCTTGGATT
GCGACAGAGGGGAAGATTCGGGAAACTTTGGATGTTTAGGAGGTAACGCAGCCGATGCTTTTGAGTTCATTGTGGATAACGATGGT
ATTGTAACGGATAAAGTTTACCCTTATACTGAGAATGATACCGCCGCGTGCAAGGCCATTGAGATGGTTACCACTCGGTATGTTAC
CATTGATAGTTATGAGGATGCTCCACATAACGATGAGATGTCTTTGAAGAAGGCTGTCGCACATCAACCTATTAGTGTTATGATTG
AAGCCGAAAATATGAAACTCTACAAATCTGGTGTGTTTACAGGGCCATGTGATCATTGGTATGGAAACCACAATGTGGTAGTTGTG
GGGTATGGAACGACAGAAAGAGGTGAAGACTACTGGATTATCCGTAACTCATGGGGAGCAAACTGGGGTGAAAGTGGATACATTAA
GCTTCAGCGTAACTTCCACAACTCAACTGGGAATTGTGGAGTCGCAATACGGCCTGTGTACCCACTCAAGTCCAACTCAGCATTTG
GTTTGTTGTCTCTAAGTGTATGTAAATTGGGGGTTTTATTTGTTTTAATTGGTTGGGTTTTGTTGTGAGATAGACGTTGCCAAGCT
CTATCCGAAAGCCGGATGTCTTGTGTTGTTTGTTATCTTTAATTTAGTTCAATTCTCTCATCGAGGGTTTTTGAGAATTATTTAAG
ACTTTCATGTTCTTCCAGAATTGATTAAAAATAAGAGACTTTCTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566867 putative cysteine proteinase [Arabidopsis thaliana] | 1285 | 4e-139 |
| AAM65468 cysteine proteinase [Arabidopsis thaliana] | 1278 | 2e-138 |
| XP_002877310 hypothetical protein ARALYDRAFT_484828 [Arabidopsis lyrata subsp. lyrata] | 1261 | 2e-136 |
| NP_566634 putative cysteine proteinase [Arabidopsis thaliana] | 1211 | 1e-130 |
| BAC43113 putative cysteine proteinase RD21A precursor [Arabidopsis thaliana] | 1206 | 5e-130 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LXW3 Probable cysteine proteinase At3g43960 | 1285 | 2e-140 |
| Q9LT77 Probable cysteine proteinase At3g19400 | 1211 | 6e-132 |
| P43297 Cysteine proteinase RD21a | 870 | 2e-092 |
| P00785 Actinidain | 845 | 2e-089 |
| P25776 Oryzain alpha chain | 844 | 2e-089 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAC2 Cysteine proteinase | 1278 | 2e-138 |
| Q9LT78 Cysteine proteinase | 1159 | 1e-124 |
| Q8W182 Senescence-associated cysteine protease (Fragment) | 1085 | 4e-116 |
| Q3EB42 Putative uncharacterized protein At3g19400.2 | 958 | 2e-101 |
| B9RYC1 Cysteine protease, putative | 947 | 4e-100 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G43960.1 cysteine proteinase, putative | 1286 | 1e-141 |
| AT3G19400.1 cysteine proteinase, putative | 1211 | 5e-133 |
| AT3G19390.1 cysteine proteinase, putative / thiol protease, putative | 1159 | 6e-127 |
| AT3G19400.2 cysteine proteinase, putative | 958 | 1e-103 |
| AT1G47128.1 RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase | 870 | 2e-093 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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