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Information for unigene UN20255
| FASTA Sequence |
| Unigene ID: UN20255 | Length: 1595 |
| SNP | CCTCACGGCAATCGTTGGATTGTAGTATTATCAATCAATGCTAAAGAAACCTTATAAGAAGAGAACCAACTGTGTGGAAACATGTC
TACAGATTATCCCACCCTATCGAATGTGTACAGAAGTAACAGGACTACAATGAAAAATGTGGCAATCAAATTACAAGACAAATATA
AATAATTACTCTAATTTACAGGATATAACTCAAAAAAAATGCCCAGAGGAGAAAACAAAAACAAAAACAAAAACAAAGCAGTTTGG
TAGAATTTTCCTTCATTTCAATTCACATCTGAGAAGCAGCAGGCATCTCATACTGCAAAGCAAATGCTTCAACTCGGTTTCTCAGA
TCACATATGTCTTTGTTAGAGCATAGACTCTTCACAAACTCCTTTGTGTGACTTGCCATGTTCTCCCTGCAACGCACTCGTTATCT
GAGCCGCTTTCATCAGAAAATCCGCTATTGTCTCGAAATCAGACTCTATACAGCCTCGGGTTGTCATCGCCGGTGTCCCTATCCTT
ACACCGCCAGGAGATATTGTACCATTGTCACCAAATATAGCAGTCTTGTTCAAGGTTATATGGCACATCTCACAGACCTTTTCGTA
GACTTTGCCAGTTAAGCCCAAAGGAGTGAGATCCCAGAGCAACAAATGGTTGTCTGTGCCACCTGTAACCAGTCTGCATTTTCTTC
GAAGCAGAGCTGATGCTAAAGCTTGAGCGTTTTTCTTCATCTGTTGTACGTAAGCTTTGTACTCTGGAGTAGCCACTTGTTTCAAG
GCAATGGCGAGAGCTGCGATATGGTTTGTGAGGACCTCCTTGTAGCGAGGGAAAAACAGCAAAGTTGATCTTCTCCTCTAAATCAT
AGTGCGTGGAACTGTCGCAATGACTAGCGTGATGGCCTTGCTTTCTTATCTTTGGTCCTCTCCTGTAGAAGATGATACCTCCTCTG
GGACACGTAGACCTTTGTGGGTAGTGGAGGTAACTATGTCGCAGTGATCAAATGGATTAGAACATTCCTTAGTGGCGACAAGACCG
CTAATATGAGCCATATCACACATCAAAACCGCACCACACTTGTCAGCAATCTGTCTAACCCTCGAAAAATCCCAGTCCCTAGGGTA
GGAGCTGCCTCCACAAATAAGAATCTTGGGGCGGTAATCAAGAGCCTTATCCTCAAGCTTATCGTAATCAATAAACCCAGTTTGGG
GGTTCACTTTATAAGGAAAACTCTCAAAGAAGATTGATGTAGCGGAATCTTCTTCCCACCAGGAGTACAATAGCCATGACTCATGT
GGCCACCGGAAGGAGAATCGAGGCCCATGATACGCTCACCGGGAAGCAAAAGAGCGGTGTAGACGGCGAAATCGGCAGAGGTACAA
GAATAGGGCTGAACATTAACACCCCATTTATCAGATTCAAGACCAAAGGCAGTAAGAGCTCTAGCGATACAGAGATTCTCAATCTG
GTCGATGTATTGATTCCCAGTGTAGTATCTGGCTCCAGGCATGCCTTCGGAGTACTTGTTGGTCAAGTGACTTCCCAAAGCTTCCA
TGACAGCTCGACACACGAAGTTCTCGGAAGCAATCAGCTCGATTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564473 serine hydroxymethyltransferase 7 [Arabidopsis thaliana] | 1182 | 4e-127 |
| AAG52195 putative hydroxymethyltransferase; 49598-47322 [Arabidopsis thaliana] | 1182 | 4e-127 |
| XP_002893915 hypothetical protein ARALYDRAFT_891266 [Arabidopsis lyrata subsp. lyrata] | 1181 | 5e-127 |
| AAM61506 putative hydroxymethyltransferase [Arabidopsis thaliana] | 1179 | 9e-127 |
| XP_002529531 serine hydroxymethyltransferase, putative [Ricinus communis] | 1045 | 3e-111 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54EW1 Serine hydroxymethyltransferase 2 | 675 | 1e-069 |
| Q54Z26 Serine hydroxymethyltransferase 1 | 665 | 2e-068 |
| P50432 Serine hydroxymethyltransferase | 386 | 3e-036 |
| P07511 Serine hydroxymethyltransferase, cytosolic | 380 | 2e-035 |
| Q5E9P9 Serine hydroxymethyltransferase, cytosolic | 379 | 2e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84WV0 Serine hydroxymethyltransferase | 1182 | 3e-127 |
| Q9C8X6 Serine hydroxymethyltransferase | 1182 | 3e-127 |
| Q8LFB5 Serine hydroxymethyltransferase | 1179 | 6e-127 |
| B9SU62 Serine hydroxymethyltransferase | 1045 | 2e-111 |
| B9GUH3 Serine hydroxymethyltransferase | 1034 | 4e-110 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G36370.1 SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 1182 | 2e-129 |
| AT1G22020.1 SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 1000 | 2e-108 |
| AT4G13930.1 SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 798 | 5e-085 |
| AT4G13890.1 EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 778 | 1e-082 |
| AT4G37930.1 SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding | 574 | 5e-059 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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