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Information for unigene UN20256
| FASTA Sequence |
| Unigene ID: UN20256 | Length: 1121 |
| SNP | GGGGAGGGACAGAGATAGAGAAGCGCAAATATCAGAGAGACAGCGAAGAAGAAAAGAATCATCTTTTAACTCTTTGCCTAACTGTG
ACGAATCCAAAGTGTAAGGATGCTTAGCTTGAGGTATTCATTACCGTATCTTCCTCAAACAAAGGAATCAACTAAACTCTTCTCCA
GGAGGCCTAGCAATGTTGTGGTTTGTGCGGCTAGAGGTCCAAGACCTCGATCTCCTCGAGTATGGAAAACAAGGAAGAGAATTGGA
AGTATCTCCAAGTCTGCCAAGATGATTGCTTGTATAAAAGAATTGTCGAACGTTAAAGAAGAAGTATACGGAGCGCTTGACTCCTT
CATTGCCTGGGAGTTAGAGTTCCCTCTTGTCATTGTCAAGAAGGCTTTAGCTATTCTTGAAGACGAAAGAGAATGGAAGAAGATTA
TTCAGGTGACAAAATGGATGCTGAGCAAAGGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAACGCTCTAGCTGAAGAT
AACCGGCTTGACGAAGCTGAGGAACTGTGGAACAAATTGTTCATGGAGCATTTAGAAGGAACTCCAAGAAAGTTTTTCAACAAAAT
GATCTCTATCTATTACAAGAGAGACATGCACCACAAACTCTTTGAGGTGTTTGCTGACATGGAAGAGCTTGGAGTGAAACCTAACA
TTGCGATTGTGGATATGGTTGGGAAAGTGTTTTTGAAACTTGGGATGAATGATAAGTACGAGAAGCTGATGAAGAAGTATCCTCCA
CCACAGTGGGAGTTCAGATATATCAAGGGAAGACGTGTTAAGGTCAAGGCTAAGCAGCTGAATGAGCTAAGCGAAGGGGAAGGAGG
TTTAAGCAGCGACGAAGACAAGATTGAGAGTAAAACTGAGGAAGCAAACCAAGATGGTGATGATTTCAGTGAAGAGGAAGAAGAAG
GTTTGGGGGCGAATCAAAGACAGATTGGAACATCTAGAGAACCATGTCTTGATCATTTGGACTCTTTTTGACTTATAAGTGTTCAC
TTAATGAGCCTTTGAGATTTTGTATATACTATTGGATCATGCATGGAAACATTTTGAGTCATGTTTCTGTCAGAAACTCAAGCTCA
GTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567622 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 1357 | 1e-147 |
| XP_002867860 EMB1417 [Arabidopsis lyrata subsp. lyrata] | 1270 | 2e-137 |
| CAA17538 putative protein [Arabidopsis thaliana] | 1244 | 2e-134 |
| XP_002274318 PREDICTED: hypothetical protein [Vitis vinifera] | 965 | 4e-102 |
| XP_002513638 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 929 | 6e-098 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LG95 Pentatricopeptide repeat-containing protein At4g21190 | 1357 | 6e-149 |
| Q2V3H0 Pentatricopeptide repeat-containing protein At4g18975, chloroplastic | 445 | 3e-043 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RIR9 Pentatricopeptide repeat-containing protein, putative | 929 | 4e-098 |
| B9MX61 Predicted protein (Fragment) | 922 | 2e-097 |
| C6TL55 Putative uncharacterized protein | 860 | 4e-090 |
| B8A9S3 Putative uncharacterized protein | 850 | 6e-089 |
| B9EZR0 Putative uncharacterized protein | 844 | 3e-088 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G21190.1 emb1417 (embryo defective 1417) | 1357 | 5e-150 |
| AT4G18975.1 pentatricopeptide (PPR) repeat-containing protein | 445 | 3e-044 |
| AT4G18975.2 pentatricopeptide (PPR) repeat-containing protein | 445 | 3e-044 |
| AT4G18975.3 pentatricopeptide (PPR) repeat-containing protein | 445 | 3e-044 |
| AT1G04590.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 335 | 2e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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