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Information for unigene UN20278

FASTA Sequence
Unigene ID: UN20278Length: 1087  SNP
GGTATCCTCCCAGTATTATTCAATAGAACACACATAAACAAATGATCTCTTGGATTACAAAAGTTTTTAAAAGAGGGATATGAAAA
CCGTAATACAATACTCTTAACACACTAAGTTTAAGATTTAACCAAGGGTGAATGGACAAACCGATAAGACAAGAGAGAACATTCAA
TCAAATCAGTGTCCTGACACAATATTGATTTTTTTTCTTTTCCTTTTTCATGTCATTTGGGTTCTTGCTGAAGCCACTTCTGAGAC
TTTGTGGATTGTGTCTTTCAAACTGAGATCATGTCCTCTTCATAATGTATCCCAAGATTAAGCCGATTAGTCCCACCAGAAGAACG
TACATGAACGGGATTCCACCACCACTCTGACTTCTCTTGCTTTCACGCTTCAACTTCTCCAATTCTTGTTGAAGTCTGTTGTTCAG
TTGAATCGCAGAGTTCTTTTCCTCCGTGAGCCTTGTGATGAGAGCTCTCGCCTCTGATGAGTTTTCCTGAGGTTCAACCCTGTCCA
CGCTAAATCTTGGAGCAGCAGTAAAATCAGAAGCCCCATTGTCAGAGACAGAAGCTCTAGGCGAAGAGCCCTCTTCAGACCCTTCT
TCACGCACCGGGGACGGTGGACGAGGTGGATCAACGTAGACAACTCTCAATTTAGTCTCCTCAACTCGATGCCCTGCCTCTTTACT
AAACATCTCAGGAGTAACATCCTTGGGAGTGACTCCAGGAGTAGAGACAACACACTGAAGCAAGAACTTGTCCTTGCACTGCATAT
CACCTGGAGCTTCCTTTTGCGCTTGCATCGTCACTAGAACTTCAGAAGAGGATCTGGGAAGCACAACGCCAGTGTTAGGCCTCACA
CAATACTTCTTCGGATTCGTCGTTTTTACCTTGAAGGCGACGTAATCGTCGGTTTTGTTAGCTAAATAGAGAGAGCAAGAGATCTG
TTTCTTCAATTCAAAAGGGAATTGAAGATCGATAGGATCGATGTCGAGAAGCGCGTTACTCATTCTGATAAGATCTCCGGTGAGTT
AAAATCGTTTTCCGGCAGAAGAGAGTTTTGGCGTCGATGTATATGCAATGCACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata]10792e-115
NP_182039 VAP-like protein 12 [Arabidopsis thaliana]10675e-114
NP_567101 vesicle associated protein [Arabidopsis thaliana]9654e-102
AAM63134 putative VAMP-associated protein [Arabidopsis thaliana]9493e-100
XP_002301268 predicted protein [Populus trichocarpa]8678e-091

Swiss-Prot top hits (Blast detail)Scoree value
O60119 Vesicle-associated membrane protein-associated protein C16G5.05c1953e-014
Q10484 Uncharacterized protein C17C9.121846e-013
Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein1721e-011
Q9P0L0 Vesicle-associated membrane protein-associated protein A1702e-011
Q5R601 Vesicle-associated membrane protein-associated protein A1702e-011

TrEMBL top hits (Blast detail)Scoree value
Q9SHC8 At2g4514010674e-114
Q8VZ95 At3g606009652e-102
Q8LDM1 Putative VAMP-associated protein9492e-100
B9GPC4 Predicted protein8676e-091
B9MUW8 Predicted protein8578e-090

Arabidopsis top hits (Blast detail)Scoree value
AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule10734e-117
AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding9713e-105
AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding7043e-074
AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding6837e-072
AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein6353e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  13%
 
65  33%
 
117  47%
 
191  7%

Unigene MembersMember information