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Information for unigene UN20285
FASTA Sequence |
Unigene ID: UN20285 | Length: 1079 |
SSR | | GGATCTCAAAACCAACAAAACAAACAAAAAAAAACTTTTTCAAATCCCTAAAAGAGATGTCGACGGAGGAAGAACCCAAGGTCGTG
GAGTCAGGAGACGCCGAAGCCGACGCCACGGTGACGACGACGACGGAGAAGAAACCTGCTAAAGCTAAAGCTAAGAAGACGAAGGA
AGCTAAGAAGAAGCCTGCTGCTGCTGCTGCACCGAGGAAGAGAACCACTTCGTCTCATCCTCCTTACGAAGAGATGATAAAGGATG
CGATCGTGACGTTGAAGGAGAGGACCGGATCTAGCCAATACGCGATTCAGAAGTTCATCGAGGAGAAGCAGAAGTCGCTTCCTCCT
ACTTTCAGGAAGCTTCTTCTCGTCAATCTCAGGAGACTCGTCGCTTCCGGGAAGCTCGTCAAAGTCAAAGCCTCTTTCAAGATTCC
TTCTGCTTCAGCGGCTAAACCGGCTGCGGTTAAGAAGAAACCGGCTGCTACGGTTACTAAACCGAAGGGTAAAGCAGCTGCTGCTC
CTGCTAAGAAGGCCAAACCAGCTGCTAAAGGAACCAAGAAACCTGCTGCTTCTGCTGCTAAGCCTAAGGCAAAGACAACGACAACT
AAAGCTGCTGCGAAGCCGAAAGTTACTGCGAAGCCTAAGACGAAGAGTGTAGCTGCTGTTTCGAAGACGAAGGCGGTTGCTGCGAA
GCCTAAGGCGAAGGAGAGACCTGCTAAAGCTTCGAGGACTTCGAGTAGGACATCTCCAGGGAAGAAGGCTGCTCCTGCTAAGAAAG
CGGCTGCTCCTGCGGCTAAGAAAGCTGCGGCGAGTAAGAAGGTTCCGGCTAAGAGTGCGAAGGTGAAGTCTCCGGCGAAAAGGGCT
TCGACGAGGAAGAAGTGATGATGGTTTAGCTTCTCTTAGGGTTATAAGTCTTTTGTATAATTGAATCGTCTATGAAGGGGGCTTGT
TTTTTTACTTCCAAAGTTTATGTTTTGTTATATTTGTCTTTGGTTTCTTCTCGAAACCCTTTTATCTTGTAATTTTTGGTTTGTTT
GGAATTTTAATAGCTATATGTGATGGTTTGCAAATATGTGCTTATGT
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GenBank top hits (Blast detail) | Score | e value |
NP_180620 histone H1.2 [Arabidopsis thaliana] | 819 | 3e-085 |
XP_002879272 hypothetical protein ARALYDRAFT_481979 [Arabidopsis lyrata subsp. lyrata] | 757 | 5e-078 |
XP_002892357 expressed protein [Arabidopsis lyrata subsp. lyrata] | 672 | 3e-068 |
NP_172161 histone H1.1 [Arabidopsis thaliana] | 649 | 2e-065 |
CAA44312 histone H1-1 [Arabidopsis thaliana] | 621 | 3e-062 |
TrEMBL top hits (Blast detail) | Score | e value |
B9GS56 Histone H1 | 664 | 2e-067 |
B9H8I5 Histone H1 | 609 | 5e-061 |
Q9AT20 Histone H1 (Fragment) | 577 | 2e-057 |
Q9AT18 Histone H1 (Fragment) | 575 | 4e-057 |
Q9AT19 Histone H1 (Fragment) | 574 | 5e-057 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G30620.1 histone H1.2 | 824 | 3e-088 |
AT1G06760.1 histone H1, putative | 659 | 4e-069 |
AT2G18050.1 HIS1-3 (HISTONE H1-3); DNA binding / nucleosomal DNA binding | 249 | 1e-021 |
AT2G18050.2 HIS1-3 (HISTONE H1-3); DNA binding / nucleosomal DNA binding | 186 | 3e-014 |
AT1G14900.1 HMGA (HIGH MOBILITY GROUP A); DNA binding | 179 | 2e-013 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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