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Information for unigene UN20289
| FASTA Sequence |
| Unigene ID: UN20289 | Length: 1078 |
SSR | | GCACTTAGAGACTTAAGGAGATTGACTGACGATTACACTTCATTTGTAAAAAGTAGATGAGTCGGAGAAGTTACAATCGAAGAGGA
ACTTCAAGAATAGAAAAAAAAAAACAGAGCGAATGGTGTAAATAAAAAAGGTTACTTTGTCGAAAAAAATGTTTTTTGCAGCAAAA
GGGGAACTGGTGGTTTTTAAGACTCGGTCCTCTCGATACCTTGTCTGACTATGATTCTGCGACCTTCATATTCTGTTCCATTGAGC
GAAAGAGCAGCATCACGTTCGTCAAGGTTCGCAAAGGAAAGAAAGGCAAAGACTCTGTTTTTCCCAGTCTTGCGGTCGTGCAACAC
TCTGGTGCTCACGACAGTACCAAACTGGCTAAAGTGGTCTCTCAAACCATCAGGCTGCGTGAGCCAAGGGAGGTTTCCGACATAAA
CCTTGTATGGGCTTTCGTACATGAGAATCTTCTTAGGTGTTGAGTTCAAGGCTGATGTGTTTTTTCTGGTTCCTGGATTCATGTCA
ACAGAGTACCTAACCCGCATCTCCCGACCACCTACTTCATTTCCATCAAGAGAAGCAATGGCGTTTTTGGCAGAGTTGATAGAACT
CATTGTGACATAACCGCTTCCACGGCTCTCTCCAGTCTCTGGATTTCGAGATACCTCGACGGAGATGACAGTTCCAAAAGACTGAA
ACATGTCGAGAAGCTGAGTAATGTCATAGCTTCTTGGGATATTACAAACGTATAGCTCGCAAGGTCTCGGTTTCTTCGTCACCACT
GGCTCCGCTTCGGTTTCTTCTCCTGTCTCTCGATCAGCTTTAACTTCTTCTTCTTCTTCTGCTTCTTGTGTCGCTTCATCCAGAAC
TGATAATTCTGAAGAAGAAGAAAAGACCTTGAGTTGCAGTCGTTGGCGAGAAAGAGAAGAGAGATGGAAAGAGGTGGTAGAAGCTT
TGAGAGATGCTACGTAAAAGCAAGAAGAGGTTAACGTTTTGCATTTTGGGATGGCATTGGAAGATGATCGAGAAGAAGATAAGGGA
ATTGCGAAGCAGGAGGAGGAGGCTGCCATTATCCAACCAAGAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_171616 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1049 | 6e-112 |
| NP_001030925 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1037 | 2e-110 |
| XP_002889386 predicted protein [Arabidopsis lyrata subsp. lyrata] | 982 | 4e-104 |
| AAF26472 T25K16.8 [Arabidopsis thaliana] | 839 | 1e-087 |
| XP_002515076 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 712 | 8e-073 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 342 | 3e-031 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 304 | 7e-027 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 283 | 2e-024 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 264 | 3e-022 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 262 | 5e-022 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W592 At1g01080/T25K16_7 | 1049 | 4e-112 |
| Q2V4R5 Putative uncharacterized protein At1g01080.2 | 1037 | 1e-110 |
| Q9MAM6 T25K16.8 | 839 | 1e-087 |
| B9RNK5 Ribonucleoprotein, chloroplast, putative | 712 | 5e-073 |
| B9I948 Predicted protein | 666 | 1e-067 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G01080.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 1050 | 2e-114 |
| AT1G01080.2 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 1038 | 5e-113 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 303 | 8e-028 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 267 | 1e-023 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 262 | 4e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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