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Information for unigene UN20303
| FASTA Sequence |
| Unigene ID: UN20303 | Length: 982 |
SSR | | GGAGGGTTAGAGAAGAATGGAGATGATGATGATGCAGGAGCAGGAGGAGGCGGCAGCAAATAAAGCTGGATCGGAGGTTTCTTCTC
CAAACCAGACGATTTACATCAATAATCTCAACGAAAAAGTCAAGCTCGATGAGCTGAAGAAGTCGCTAAATGCGGTGTTCTCGCAG
TACGGGAAGATAGTGGAGGTGTTGGCGTTTAAGACATTGAAGCACAAAGGGCAAGCTTGGGTTGTGTTCGACAATCCTGAATCTGC
TTCCAATGCTATTTCCAAGATGAATGGATTCCCCTTCTACGACAAACCCATGAGAATACAATTTGCTAAAACGAAATCAGATGTTA
TTGCCAAGGCTGACGGCACCTTTGTTCCTCGCGAGAAACGAAAGCGACACGAGGAGAAAGGTGGTAAGAAAAAGAAAGAGCAGCAC
CATGATAATACACGTATGCCCATCCCACCATATCCTGGTGTCTATGGATCTGCCCCTCCTCTTTCGCAAGTACCATACCCTGGTGG
TGGTGGTGGGTGGTGGTGTCAAAAGCAATCTTCCCGAGGCACCCGCACCCCCAAACAACATCCTCTTTGTCCAACACCTTCCTCAC
GACACAACTCCTGAGAGGCTTCAGGAACTCTTCGGCAATTACCATGGCTTCAAGGAGGTTAGGATGGTTGCTGCCAAGCCAGGTAT
TGCTTTCGTTGAGTTTGCTGATGAGATGCAGTCTACCGCTGCTATGCACGGTCTTGAAGGTTTCACCATTCACCAAACCCCTATGC
ACATCACCTATGCTAAGAAATAAACCCCCTCCATTTTGGATTTTGGTGGGGTGCTACTATTATTATCTCCCTTGTATTCTGTCAAT
GCTACTTCTTCTTTCTTCTCTTGTGTTAGAGATTTTTTTTTTTTCTTAGAATATATTACAACTTTAATCCAGTGTAAGAAAAGGTT
TTAGTGGGCTTTTATTGACCCATTCATCTTTAGCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_182280 spliceosomal protein U1A [Arabidopsis thaliana] | 677 | 7e-069 |
| XP_002880313 hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp. lyrata] | 673 | 2e-068 |
| XP_002523100 small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis] | 599 | 8e-060 |
| CAA90282 U1snRNP-specific protein, U1A [Solanum tuberosum] | 575 | 5e-057 |
| XP_002302719 predicted protein [Populus trichocarpa] | 573 | 9e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P45429 U1 small nuclear ribonucleoprotein A | 370 | 1e-034 |
| P09012 U1 small nuclear ribonucleoprotein A | 368 | 2e-034 |
| Q06AA4 U1 small nuclear ribonucleoprotein A | 367 | 3e-034 |
| Q2KIR1 U1 small nuclear ribonucleoprotein A | 366 | 4e-034 |
| P43332 U1 small nuclear ribonucleoprotein A | 349 | 4e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39244 At2g47580/T30B22.12 | 677 | 5e-069 |
| B9SAT1 Small nuclear ribonucleoprotein U1a,U2b, putative | 599 | 6e-060 |
| Q41498 U1snRNP-specific protein, U1A | 575 | 3e-057 |
| B9GSB4 Predicted protein | 573 | 6e-057 |
| A9PEB3 Putative uncharacterized protein | 572 | 8e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding | 677 | 3e-071 |
| AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding | 371 | 9e-036 |
| AT1G06960.1 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 370 | 1e-035 |
| AT1G06960.2 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 370 | 1e-035 |
| AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 272 | 3e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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