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Information for unigene UN20306
| FASTA Sequence |
| Unigene ID: UN20306 | Length: 1092 |
| SNP | GGACCCAATCTGTAATTTTCCCCTTTGTTAATAAAGAAAAAACACAAAAGCCAGTGTTGGGCTCTCTCTAACAACACTCGCTCGAC
GACCATGGCGGTCTCATTTAACACAACCCTTCACCAGTCATCTCTGAGTCCGTGCTGTAGCATCAAGCTTTACTCTGGGTTGAAGC
CTCAATCTTCAAGCTTTTTGAGAAATGGGTATCAGAATTTGAACAAGGAGTTCTATGGCAGGATTCACAAGAGTTTGCAATCCGGG
ACGGGGAAAGCGAGTAGGTCAAGGGTGAAGATGATGCCTATTGGTACACCTAGAGTTCCCTACCGAAACAGAGAGGAAGGCACTTG
GCAATGGGTTGATATTTGGAACGCCCTTTATCGAGAGCGTGTGATCTTCATTGGACAAAACATAGACGAAGAGTTTAGCAACCAGA
TATTAGCAACTATGTTGTATCTCGATACTCTTGATGACTCTAGGAGGATTTATATGTACCTTAATGGACCTGGCGGCGATCTAACT
CCAAGTCTAGCTATCTATGATACGATGAAGAGCTTGAAAAGTCCGGTTGGGACACATTGTGTTGGGCTTGCCTATAACCTTGCTGG
TTTTCTTCTTGCTGCCGGTGAAAAGGGTCAACGGTTTGCGATGCCATTGTCAAGAATCGCCCTCCAGTCACCAGCTGGTGCAGCCC
GTGGTCAGGCTGATGATATCCAAAATGAAGCGAAAGAGCTTTCAAGGATAAGAGATTACCTCTTCAACGAACTAGCCAAGAATACA
GGACAGCCTGCGGAAACGATCTTCAAAGACTTGAGCAGAATGAAGAGGTTCAACGCAGAAGAAGCTATTGAGTACGGACTTATCGA
TAAGATTGTTAGACCACCGCGCATCAAAGCCGACGCTCCTCGCCAAGACGATACCTCAGGCCTCGGTTAATTTGTTTTTTTTTTTT
TTTCACTTTGTAATGTCATAGTTTAACAAGCTTAAAGTTGATTGTTCCTTGTTGTGATTGTTACCGAATTAAAATCACTTTGCTTG
TTATTTTTCCCCACTGGGTTCTACAAACATTTTTAAAGCTGAAGTGAGATGAACATTTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889934 hypothetical protein ARALYDRAFT_471391 [Arabidopsis lyrata subsp. lyrata] | 1384 | 9e-151 |
| NP_563907 ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana] | 1380 | 3e-150 |
| AAL14412 At1g12410/F5O11_7 [Arabidopsis thaliana] | 1373 | 2e-149 |
| XP_002509628 ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] | 1083 | 7e-116 |
| XP_002329885 predicted protein [Populus trichocarpa] | 1067 | 5e-114 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9XJ36 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic | 1380 | 1e-151 |
| Q8DJZ9 ATP-dependent Clp protease proteolytic subunit 2 | 534 | 1e-053 |
| Q8YP43 Probable ATP-dependent Clp protease proteolytic subunit 3 | 527 | 1e-052 |
| Q3MDK7 ATP-dependent Clp protease proteolytic subunit 2 | 523 | 3e-052 |
| Q20F17 ATP-dependent Clp protease proteolytic subunit | 482 | 2e-047 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RBU4 ATP-dependent Clp protease proteolytic subunit | 1083 | 5e-116 |
| B9N3L0 ATP-dependent Clp protease proteolytic subunit | 1067 | 4e-114 |
| A5ADV7 ATP-dependent Clp protease proteolytic subunit | 1036 | 1e-110 |
| A9NTE8 ATP-dependent Clp protease proteolytic subunit | 856 | 1e-089 |
| B6ST09 ATP-dependent Clp protease proteolytic subunit | 850 | 5e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G12410.1 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase | 1381 | 8e-153 |
| ATCG00670.1 Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). | 397 | 1e-038 |
| AT5G23140.1 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase | 365 | 5e-035 |
| AT1G02560.1 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | 361 | 2e-034 |
| AT5G45390.1 CLPP4 (CLP PROTEASE P4); serine-type endopeptidase | 344 | 1e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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