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Information for unigene UN20336
| FASTA Sequence |
| Unigene ID: UN20336 | Length: 1198 |
SSR | | GTTCTGTTCTCACTGCATGAAAACATACGTCGAAGGGAAAGTAAACTCTTCAGAAGTTCCCATCAGGTGTCCTCACCTGCAATGCA
AGCACTATCTCTCATCCGCAGAATGCAAAACCTTTCTTCCCGTCGCATCTTTCAACTCATTCGAGGAAGCGAACATGCGTAGCACC
AACAACGGCAAGGTCTACTGTCCGTATCCCAACTGTTCTTTTCTGTTAGACCCGCGCGAGTGTCTGTCACCGGGAAGTGCAAGCTC
AAGCTCGTCTAGTCTTTCAGAGAATATATGTTGTGTGAAGTGTCCACTGTGTGAGAGGTTTGTGTGTGTGGACTGTGGTGTTCCTT
GGCATGATTCTATGAGCTGTGAAGAGTTTCAGATTCTTCCGGTTGATGAAAGATATCCAGATGATATTACGTTGCATCGCTTGGCT
AGGTATAAGAGGTGGAAACGGTGTCAGCAATGCCGTATAATGATCGAGCTTGCTCAAGGCTGTAACCACATGACTTGTCGGTGTGG
GCATGAGTTTTGCTACTGTTGTGGAGCAGAGTACAGAGAAGGGCAACAGACTTGCACATGCGCTTTTTGGGACGATGAGGAAGAAG
ATGAAGATAACTCAGAGTCTGAGAACACAATCCAAGAACTTGAGCAATGGCCTTGGGACACATTCAGCTCAATTCCAACGGTAATG
GATGCATACTCTGAGCAAGAAAGATCTCAGCTTGCTCTGATCCAACGGTTCTTAGCGGGTGGAGGGTTTAGTCTCAGTGATCACCA
TACTACTTATCAGTCGCCACCACCTCCTCCTCCTCCTCCATGTACTACAGAGTCATCGTATGTTGAAGCAGCCATGAAAGATCTTC
ACCAGCTTCCTTGGCTTGAGAGGTTTGTGGCGGTTATAAGTGATGATTACTATGAAGAGTTTAGTAGCCAGTGAAAGGTGGAGAGA
GGCTTAACGAGAGAGTCTCTTGCTCTCTGAAGAAATTGTTGGGATTTTAGATTCTTGATTGAACTCAAAAGATTGAAACTATTTGC
TTCAACTATATATATAAAAAAGAACATTTTAAGTGGTGTTTTTATCAATCTACTTTCATTGTGTATATGTATCCAAGTTGGGGTTT
CTTGATTGAACTCAAAAAGATGAATTGTGATTGAAACTATTTGCTTCAACTATATAAAAAGAGAATATTTTGAGTGGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867925 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1514 | 9e-166 |
| NP_193702 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1510 | 3e-165 |
| BAF00722 hypothetical protein [Arabidopsis thaliana] | 1505 | 1e-164 |
| CBI29063 unnamed protein product [Vitis vinifera] | 1001 | 3e-106 |
| XP_002273428 PREDICTED: hypothetical protein [Vitis vinifera] | 1001 | 3e-106 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P0CE10 Putative uncharacterized protein At4g01020, chloroplastic | 144 | 3e-008 |
| P58283 E3 ubiquitin-protein ligase RNF216 | 124 | 6e-006 |
| Q9NWF9 E3 ubiquitin-protein ligase RNF216 | 123 | 8e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O81849 Putative uncharacterized protein AT4g19670 | 1510 | 2e-165 |
| Q0WQ77 Putative uncharacterized protein At4g19670 | 1505 | 7e-165 |
| B9SZ17 Zinc finger protein, putative | 977 | 1e-103 |
| B9NA54 Predicted protein | 965 | 3e-102 |
| B9ICJ9 Predicted protein | 950 | 2e-100 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G19670.1 zinc finger (C3HC4-type RING finger) family protein | 1529 | 6e-170 |
| AT4G19670.2 zinc finger (C3HC4-type RING finger) family protein | 1529 | 6e-170 |
| AT2G25360.1 zinc finger protein-related | 373 | 7e-036 |
| AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein | 370 | 2e-035 |
| AT3G45470.1 zinc finger protein-related | 304 | 7e-028 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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