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Information for unigene UN20360
| FASTA Sequence |
| Unigene ID: UN20360 | Length: 1629 |
SSR | | TCTCTCTCTCTCTCTCTCTCTCTCTCACTTTCCGCCACTACCACAACTCTCTAAAAGCCACTTCTTCGGTCTCGGAGAGGGGAGAC
AGAGAGAGAGAAAGACTTATAGAAGTTTCTGTCTGTCCTACTCGGAGTCTCCGTTTTCTTTCCTTCCCCGGAGATACCAGATCAGA
TCTGTTCAAGATGCAGAACGGCTCAGATTCAACGCCTCCGGCTAACCAAACTCCTCCTCCTCCTCTTCCGCCGCCTCAGCAGTGGC
AACAGCATCAACAGTGGATGATGATGATGATGATGCAACAGCAGCAGCAGCAGCATATGATGATGTACCCTCACCAATACGTTCCT
TACAATCACGGCGGCGGTCATTATCCTCCTCACCTCCAATACCCGCCCTACCATCACCACCACCAAAAGACACATGAGCGTGGTGG
ATCTGGAGGAGAAGACGTCAAGACTCTATGGGTTGGTGACCTTCTTCATTGGATGGACGAGACTTATCTCCACTCCTGCTTTTCTC
ACACCCGCGAGGTTTCTTCTGTGAAAGTGATTCGTAACAAGCAAACTCTTCAGTCAGAAGGATACGGTTTCGTCGAGTTTCACACA
CGCGCTGCAGCCGAAGAGGTTCTCCAGAGCTTCAGTGGCTCTATAATGCCCAACTCCGAGCAGCCTTTCCGTCTAAACTGGGCGTC
TTTCAGCACCGGCGAGAAGAGAGCTGTGGAGAACAACGGTCCTGAGCTGTCAATCTTCGTCGGAGACTTGTCTCCCGATGTGACTG
ACACTCTGTTGCAAGAGTTGTTCGCTGAGAGGTATCCCTCTGTCAAAAGCGCCAAAGTTGTGATCGATTCGAACACCGGGAGGTCC
AAAGGCTACGGTTTCGTTAGGTTCGGAGATGAGGAGGAGAGGTCGAGGGCTTTGACTGAGATGAATGGAGCTTTGTGTTGCAACAG
GCAGATGCGTGTCGGTGTTGCCACTCCTAAAAGAGCGGTTGCTAATAATCAGCAGCAACATTCTTCACAAGCTGTGATAGTGGCTG
GTGGGCATGGAGCAAATGGTTTCACTGGTTATGGTTCTCAGTCTGATGGTGACTCAAACAACTCAACAATATTCGTTGGGGGAGTT
GGCCCTGATGTAACTGAAGAAGACCTCAGACAACCATTTACACAATTTGGCGAAGTCGTTTCAGTGAAGATCCCAGTAGGGAAAGG
ATGTGGATTTGTCCAACTTTCTAACAGGAAGAGTGCTGATGATGCCATCCAGAGCTTGAACGGAACAGTCATCGGCAAGAACACTG
TCAGGCTCTCTTGGGGAAGAACTCCGAACAAGCAGTGGAGAGGAGACAATGGAGGATATTCACGAGGACAAGGGTACAACAATGGA
GGCTACGCTAACAACCACCACGACTCCAACAACTATCCCGCCGAGACTACTTGAAGAGAATAAGAGACTCAAGAATGATCATGGAT
CATAGTGGTTTAAGCCTTCTGTGATTCATAAGACATCAATCAATGCTAAACTTGTAGTCGAAAAAAAGAGAATTTTGTTAGATTTA
ATTTGGTTTTGATAGACTGAAACATGTTGGTTACTCTTGTCTTTGTCTGAAGACTAACTTAATGGTTATGCTCGTTAGATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188544 RNA-binding protein 47B [Arabidopsis thaliana] | 1663 | 7e-183 |
| XP_002885294 RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata] | 1636 | 1e-179 |
| AAM67293 nuclear acid binding protein, putative [Arabidopsis thaliana] | 1584 | 1e-173 |
| BAB02953 DNA/RNA binding protein-like [Arabidopsis thaliana] | 1527 | 4e-167 |
| NP_175383 RNA-binding protein 47A [Arabidopsis thaliana] | 1511 | 3e-165 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 564 | 8e-057 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 534 | 2e-053 |
| Q1RMJ7 tRNA selenocysteine 1-associated protein 1 | 349 | 7e-032 |
| Q9NX07 tRNA selenocysteine 1-associated protein 1 | 348 | 9e-032 |
| Q9QZI7 tRNA selenocysteine 1-associated protein 1 | 347 | 1e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WW84 At3g19130 | 1663 | 5e-183 |
| Q8LFI9 Nuclear acid binding protein, putative | 1584 | 7e-174 |
| Q9LJL7 DNA/RNA binding protein-like | 1527 | 3e-167 |
| B9RY32 Nuclear acid binding protein, putative | 1290 | 9e-140 |
| B9N4W3 Predicted protein | 1289 | 1e-139 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding | 1663 | 3e-185 |
| AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding | 1511 | 1e-167 |
| AT1G47490.1 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding | 1095 | 2e-119 |
| AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding | 1059 | 3e-115 |
| AT5G54900.1 ATRBP45A (RNA-binding protein 45A); RNA binding | 839 | 9e-090 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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