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Information for unigene UN20382
| FASTA Sequence |
| Unigene ID: UN20382 | Length: 1749 |
| SNP | GGGATGATTTGCTTAGTGGAGATAGTAGTGAGGAGGATGACAGTGGAGATGATGAGGCTTTCGTTGGGAAAGTGGTTTCCGATAAC
CCAAGTACTGAAACTGCTAAAACTTCAGATTCTTACTTATCTAAGACAAGATTTGATCAGTTCCCATTGTCTCCCTTATCACTAAG
AGCCATCAAGGATGCTGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACTCTTCCTATCATTCTCAAAGGTAAAGACGTGCTAG
CCAAGGCCAAAACAGGCACTGGGAAAACCGTAGCATTTTTGCTTCCATCAATTGAAGCTGTTATCAAATCTCCACCTGCAAGCCGG
GATAGTAGGCAATCCCCCATTGTTGTGCTTGTTGTATGCCCTACTCGGGAACTTGCCAGTCAAGCGGCTGCGGAAGCTAATACCTT
GCTGAAGTATCACCCATCTATCGGTGTTCAAGTTGTTATTGGAGGCACAAAGCTTCCTACAGAGCAAAGGCGTATGCAAGCAAATC
CTTGCCAGATTCTTGTGGCGACACCTGGAAGGCTCGAAGACCATATCGAGAACACTTCTGGATTTGCCACGAGATTGAATGGTGTG
AAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACATGGGTTTCCGAAGGGATATCGAGAGGATCATCGCTGCTGTTCCTAA
GCAGAGACAAACGTTTTTATTTTCTGCCACAGTACCTGAAGAGGTCCGCCAAATATGCCACATTGCTTTGAAACGGGATCATGAGT
TCATCAATTGCGTTCAAGAGGGATCTGGGGAGACGCATCAAAAGGTCAAACAAATGTACATGATGCATCACTGGATAGACATTTCT
CGCTTCTATATGTGCTTCTTAAAGAACACATCGCAGATAATCCAGACTATAAGGTTATTATTTTCTGCACAACTGCCATGGTTACA
AGATTGGTTGCTGATCTGCTTGGTCAGCTAAGCTTGAACGTCAGAGAGATCCATTCTAGAAAACCCCAGGGTTACAGAACCAAAGT
TTCCGACGAGTTCCGCAAGTCGAAGAGTATTATCCTTGTGACATCAGATGTATCTGCTCGTGGTGTCGATTACCCTGATGTGTCAC
TAGTGGTACAGATGGGATTGCCATCAGACAGAGAACAATACATACATAGACTTGGGAGAACGGGGAGGAAAGGTAAGGAAGGAGAA
GGTGTGCTAATGTTGGCGCCATGGGAAGAGTACTTTCTGTCATCTGTTAAAGACTTGCCCATCAACAAGTCTCCTCTACCGCCAAT
AGACCCTGAGGCTGTGAAAAAGGTGCAGAGAGGGCTTAACCAAGTGGAAATGAAGAACAAGGAAGCGGCGTATCAGGCGTGGTTGG
GTTACTACAAATCTCAGAAGATGATTGCAAGAGACACGACCAGACTGGTGGAGTTAGCCAACGAGTTTAGCCGCAGCATGGGACTT
GACATGCCACCAGCTATCCCCAAAAACGTTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAAGTAGAATTTTAA
CTCCATCCATTGTTTTGCTTTTGTCGTATAAGGCTTTGCAAGTGTAATCTCTTTTTCACAACCCTTCTTGCAAACACTTGATAAAA
AAGTCTCTTAGATTCTTCAGTTGTATCAAACAAACCGAAAGAAAAGCTTGACTATCCAAGCAGAGGCCAGAGGCCCGGTTCAAGTT
CTACAAGAATAATATAAATTAATTTCTAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871351 hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp. lyrata] | 1234 | 4e-133 |
| BAB10010 RNA helicase-like protein [Arabidopsis thaliana] | 1233 | 6e-133 |
| NP_196478 DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] | 1233 | 6e-133 |
| CAA09213 RNA helicase [Arabidopsis thaliana] | 1233 | 6e-133 |
| XP_002871352 dead box RNA helicase [Arabidopsis lyrata subsp. lyrata] | 1159 | 2e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FNM7 DEAD-box ATP-dependent RNA helicase 26 | 1233 | 2e-134 |
| Q94C75 DEAD-box ATP-dependent RNA helicase 25 | 1148 | 2e-124 |
| Q9FFQ1 DEAD-box ATP-dependent RNA helicase 31 | 1065 | 7e-115 |
| Q0DBU5 DEAD-box ATP-dependent RNA helicase 31 | 954 | 5e-102 |
| Q5ZBH5 DEAD-box ATP-dependent RNA helicase 25 | 907 | 2e-096 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5B8P3 Putative uncharacterized protein | 1075 | 8e-115 |
| B9SBJ5 Dead box ATP-dependent RNA helicase, putative | 1065 | 1e-113 |
| B9GR04 Predicted protein | 983 | 4e-104 |
| B8B362 Putative uncharacterized protein | 963 | 8e-102 |
| B9FTJ9 Putative uncharacterized protein | 954 | 9e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G08610.1 DEAD box RNA helicase (RH26) | 1233 | 2e-135 |
| AT5G08620.1 STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase/ RNA binding | 1148 | 1e-125 |
| AT5G63630.1 DEAD box RNA helicase, putative | 1065 | 6e-116 |
| AT1G63250.1 DEAD box RNA helicase, putative | 709 | 1e-074 |
| AT2G07750.1 DEAD box RNA helicase, putative | 701 | 1e-073 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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