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Information for unigene UN20383

FASTA Sequence
Unigene ID: UN20383Length: 858 SSR 
GGGAAAACTATAAAAGATTAATACATATTGGTCTTTGCTTTGTATATAAACTAAAATAGAGAATAGAGTTAGAAAACTTGAGAGGA
ATGAAATAGACATCTCATCATTGCAGTCTTGAGGAATTTACAACACTTTGACATAAAATGGATGATATTTTGAGCCACAAGGAGCA
CAAAGAGAGAGAGAGATAGGCATGTCTTAGATTCTTCTTTTGATTTTCCTTCATGAATGTTTCTCACTTTTCTTCCTTTGATTTAG
CTGTTGCTCCCTAATATGTTTCTGTATGTGTCTTTGACCTTCTGAAACATCACCTCTCTGTCTGGTTTGAAGATGATGTTCTTGTA
AACAAACCACCCAGTGTAACCAATGCCTACAAGTTCAAAAACACCTGGAAACAATGGAAGCTTGTCGATTGCCGAGATGAGGCCAG
TAGATCCCCAAAGAGCCACCAAAGCAGCAAATGCGAGTGAACCAATTGCATATTTGTCCTCCACTTTCTCCCAAGCTTCTTGAGCT
GTCTTGACGATTTCTGGCAACTCTGTAGTGTCAGATTCGGCAGTGGCCGAAGCTTCAACTTCGGTAGCTTTCGTCAAAACGTTCCT
CGCGATCTTCCGACAGTAAGAAGTGGACTGAAAAGGCTTAGGAGGAAGCATCGGAAGGGAAATACACGACGGAGAAGAGAAGGAGG
CCTGTCGAGTAGGAGAAGCTCTAGAATTAATGATAGTCGAAGAGGAAGAGATAGAAAGGGAAGCCATGGCTCTGGCGCTTCAATCA
CAGAAAACAACCCAACAAAATGTATATTTTGTTCGAAAAAAATCAGAGAAGCTTATTATTATAATTATCTTGAGAGATTAATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002880267 hypothetical protein ARALYDRAFT_483848 [Arabidopsis lyrata subsp. lyrata]6321e-063
NP_566086 thylakoid membrane phosphoprotein [Arabidopsis thaliana]6042e-060
AAM63765 unknown [Arabidopsis thaliana]6005e-060
XP_002320236 predicted protein [Populus trichocarpa]5503e-054
ABK95200 unknown [Populus trichocarpa]5494e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q8LCA1 Thylakoid membrane phosphoprotein 14 kDa, chloroplastic6048e-062
O04616 Uncharacterized protein At4g01150, chloroplastic2346e-019

TrEMBL top hits (Blast detail)Scoree value
B9I954 Predicted protein5502e-054
A9PFP7 Putative uncharacterized protein5493e-054
A5C9J2 Putative uncharacterized protein5233e-051
A9PJN6 Putative uncharacterized protein5091e-049
B9GRR8 Predicted protein5091e-049

Arabidopsis top hits (Blast detail)Scoree value
AT2G46820.1 PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding6047e-063
AT2G46820.2 PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding6047e-063
AT1G52220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2444e-021
AT4G01150.1 unknown protein2346e-020
AT1G52220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2321e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
614  88%
 
92  13%

Unigene MembersMember information