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Information for unigene UN20386
| FASTA Sequence |
| Unigene ID: UN20386 | Length: 1645 |
SSR | SNP | ACAGAAAGTGTCAAAAGAATAGATAGTCCATCATCGTATAGTCATTATTACAGACAGAGACGGAACACGAGCAGGCACAGAATGTA
AGTTTAACTTCTAGATTCTATTGATCTCTCTCTCTCTACATAGAATCAAGAACGCTTCCGAGAATTGCACAAAAACAAAATATTAA
AAGAGAATAAAAAACCCTTTTTAACGGGCTTTTATGTATCAGTAGCAGCAGTAGTAGAACACTCTGGTTTGCTGAGTTCATCACCC
AACATGTGATGAAGAAGTGTGTCAACTCTTTGACTCCTAGACTTCGACCCTGCAGATCGACGCCGGTTTCTTCTTTCTTGAGAATC
CTGTCCTTGACATTTCTCCTCTTCCTCCAGATCCAACTCAGTAAAGAAAGCCTCCAAGACAAAGGCAACAACCAAGTTCAACAGAA
GTAAAACAGTGATGATGTAGAAACTGACGAAATACGTAATGCTCCACCATGTCCCCGTCAAATCTTTATAGCTCTCCATCCAGACT
TGCCAGTTCCCCATCACTAGCAGATTGAAGAGTGTGACCATTCCATTGGGATAGTCATTGAAGTTGAACAGTAGATAGTCATCCTC
AGCCATCTCAGTTTTGAAGAGTTGTTTGTTCCCAGCATTCACAAGCCCACCAAAGATCTGTACACCAATAGAGCAGTAGATACACA
GCACGCAGAAGATGGTCCCTAAATATGGCATCAAACTTGGAATAAGAGTGATGAATGTCGCAATAAATGCTCGGTATCTCTGGACG
TGCATAAGAAGCCTTATCAGTCTTAACATTCTTGCAAGGAGAAGGTATCGGATCCATTCTCCGTTTGAGAAGAGAGTGTTCTCGTC
TGGAGTTATGAAGGTAGCTGTTTCCCCAATAACTATGACCCATGTGACTATAAAATCAAACCGGTTTTGACCATCCCTCCAGTAAT
TCTCGAATCCATATGAATAGATCTTCAAAGCCATCTCCAACACATATATCCATCCAAAGACAAACTCGGCAACCTGCCAGGGCTTC
TGAGCGGAGCTTTCTTCAATATCAAGCGTAGTTTCAACAACGACAGCAATGAAGTTCACAACGAGGATGAAAGAAATAGTATATCC
AAAGTTTGGGCTTCGAACAAAGGCTCTCAGTTGTTGTGATAAGGCCGAATGGTAAATTTGCGGTAAGTTCTCAAAGAGAGATGGAA
CTTCCTCCTTTTGAAATCTAAGAGCAATGGCTTGGCAGAGGTCAGCAAACTCATCCTTGTTGATCTTGAAGTCACGAGTATCATCA
AGCTCATCAAATATCAATCCGAATTCTTCTTTTGATATCTTTGGCAACGTCCTGTAATTAGTCAACTGTTCAAAGAGCTTAATGCA
TTGCTCCTTATCAATCTGCCCGGTTTTGTCTTTGTCTATAAGACCAAAGGCTTTCTCCAGCATTCTTCTCTTCATTTGATCCATTC
CAGATACTTGCTTTGCGAGCTGTTCTTTGAAACTGTCATAAACAACGGCAAGAATCAAGTTGGTGACAAAGTAGACGCCTATTAGC
ACGTAGAGCACGAAGAACAACGAAGACCAGCGTGAAGACTTGTAAGCGCGGATCCAGACATCAGGATTGTTGGATGTTGTGAACAA
AATAAACATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAD11598 putative calcium channel [Arabidopsis thaliana] | 2377 | 1e-265 |
| NP_567258 two pore calcium channel protein 1 [Arabidopsis thaliana] | 2377 | 1e-265 |
| BAB55460 two-pore calcium channel [Arabidopsis thaliana] | 2371 | 6e-265 |
| XP_002874860 two-pore channel 1 [Arabidopsis lyrata subsp. lyrata] | 2371 | 6e-265 |
| XP_002330633 predicted protein [Populus trichocarpa] | 1902 | 1e-210 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94KI8 Two pore calcium channel protein 1 | 2377 | 5e-267 |
| Q75VR0 Two pore calcium channel protein 1B | 1780 | 8e-198 |
| Q75VR1 Two pore calcium channel protein 1A | 1771 | 9e-197 |
| Q5QM84 Two pore calcium channel protein 1 | 1657 | 2e-183 |
| Q6YLX9 Two pore calcium channel protein 1 | 1575 | 5e-174 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DFD5 AT4G03560 protein | 2377 | 8e-266 |
| B9N5V1 Predicted protein | 1902 | 1e-210 |
| B9RVZ5 Voltage-dependent L-type calcium channel, putative | 1782 | 8e-197 |
| B9EYL2 Putative uncharacterized protein | 1657 | 2e-182 |
| C5XGP5 Putative uncharacterized protein Sb03g031110 | 1638 | 4e-180 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G03560.1 ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel | 2377 | 4e-268 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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