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Information for unigene UN20390

FASTA Sequence
Unigene ID: UN20390Length: 1440  SNP
AATTAGATATTAGTATTACTACCATTAATGCATCAAATTCTGGAAAGTAAGCAGAGAGTCAACACGCGAGAAAAGGAAACCGTTAT
TTCTCAGGTATACTTGGAGATAATTATACAAACCTGAGCTGCACATTAGAGATATTATAATCCTAGAAGCAAACCTTGATAACAAT
GTCAAATCCATTTTAAACAAGTGTTACACAAGCTTTCTCAAGACATGCAAATGCACCAACTTCCCTGAGTGAGTGATGATCAAGTA
TCATGGGACTGATCTTTCTCGATGAAGTCCAACGCCTGATCCTTTGATATAACTTGCACTTTACTCACTCTGTTCTTATGAAATAC
TCCGTATATCTTATCCGCAACCTTCACAAGCTCGGGACGGAAAGTTGTGGTAATGAACTGCGTGCTTACACTGTCATCAGCTAGAC
CACGAATCATGTTGCCCACAGCAGTTCGATACTGAGGATCGAGCGCCGCATCAATCTCATCAAAAAGATAGAATGGTGCAGGGTCG
CATCTCTGGATGGCAAAGATTAATGCGAGAGCAACGACGGTCTTTTGGCCTCCCGACAGTTGTTTCATTGACTGCGTCTCCCCTTG
ACCAGTGAACGACACCTTCACTGTTACGCCAAGGTATTTCTCAACCCTTCCCTCTGCATCAGCCTCACGACCTCCATCATCCTCAT
CATCTTCATCATCATGATCGCGGTCCTTTTTCTTCGTCATGACAAGGTGACCATGCCCACCTTGCACAAGCTTAGAGAATACTTCC
CGGAAGTTGCGTGCAACCCCTTTGAAAGTACGTTCTATAGATTCATCTTTCCTCTGATCCAGGACTGTTATCAGTTCTTTAATTTT
CTCATCTCCTGCATCAAGCTCCGCTTGCCGTTGCTGAAGTTCTTCTCGTTGTTCTGTGAAATTTACATATTGATCAAGCGCTTTCT
TGTTTACATGGCTGAATTGTTGCAGTTGCTCACTGCACCGGTGTAGCATCTTCTGCAGCTCCTTGATATTTTTCCGTTTATACGTG
TCAAAAGCGTCAGATGACAATGGACCTAATCCCCTAATTTTCTTCGTATACTCTTCTTGCTTAGCGAGGAGTGTGTTGCGAAGGCT
GAATAGTTCCTCCAACTTTTTATTTGCATCTTGCACTGTCGTCTCACAGTCATCTTGCAATGCCTTTAACTTTGCTTTCTCATCTT
TAAATTTCTTGACCTGCTTAGTCTTCTCATCAATGCTTCGGGAGAGACTTTCGAGCTCGTTTGTGATCTCTTCAACCAACAATTTT
GCATCATCGAGTTCTTGTGTTTTTAAGCCAGCTGGACTAGGCAAACTATCATCCTCGATGGAAGCTATTGTAGCCTGTAACTCACT
TATTCTCCTCTTTAAGTTGGTAGATAAGTTGGTCTCCAACTCTGCTTTCCTTGTCTCCCTCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAS09910 SMC3 [Arabidopsis thaliana]17121e-188
AAM15423 putative chromosome associated protein [Arabidopsis thaliana]17058e-188
CAD43403 SMC3 protein [Arabidopsis thaliana]17058e-188
NP_001077968 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) [Arabidopsis thaliana]17058e-188
BAE98460 putative chromosome associated protein [Arabidopsis thaliana]17058e-188

Swiss-Prot top hits (Blast detail)Scoree value
Q9UQE7 Structural maintenance of chromosomes protein 38245e-087
Q9CW03 Structural maintenance of chromosomes protein 38245e-087
Q5R4K5 Structural maintenance of chromosomes protein 38245e-087
O93309 Structural maintenance of chromosomes protein 38173e-086
O97594 Structural maintenance of chromosomes protein 38022e-084

TrEMBL top hits (Blast detail)Scoree value
Q6QU76 SMC317129e-189
Q0WWN8 Putative chromosome associated protein17056e-188
Q56YN8 Putative chromosome associated protein17056e-188
Q8H2D2 SMC3 protein17056e-188
Q8S8B4 Putative chromosome associated protein (Fragment)17056e-188

Arabidopsis top hits (Blast detail)Scoree value
AT2G27170.1 TTN7 (TITAN7); ATP binding / protein binding17062e-190
AT2G27170.2 TTN7 (TITAN7); ATP binding / protein binding17062e-190
AT5G62410.1 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter2716e-024
AT3G47460.1 ATSMC2; transporter1651e-011
AT5G48600.1 ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter1641e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  29%
 
113  43%
 
82  29%

Unigene MembersMember information