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Information for unigene UN20420
| FASTA Sequence |
| Unigene ID: UN20420 | Length: 1850 |
SSR | | GGACCCTCCAAAAGACCTACACAAGAGTACACAAAGCCACACACATCCTTAGGCGATAATCTAATAACAGAAAACCCCCCAAAAAG
AGAGAGAGAGTGCTTCTTCATGTACTCGTCTCAAAACGATGGCGTATACCAACCGCTTCTCCACCCTCCGGCTGATGGAAGGGTGC
CGCTTTCTCCATCGACGGAGTCTAGCAACGGCGAGCTAGAGAGAGTGCTTTCCGACGTTGAAATTCCGTTATTTCACCGCCTTCGT
AAGGCCACGATGATTGAATCCAAGCTTCTCTTCAAACTTGCTGCTCCTGCGGTCATCGTGTACATGATAAACTACCTGATGTCCAT
GTCCACTCAAATCTTCTCCGGCCATCTCGGGAACCTAGAACTCGCTGCAGCTTCTCTTGGTAACACCGGGATACAAATCTTCGCAT
ACGGTCTCATGTTAGGAATGGGTAGTGCGGTAGAAACGTTGTGTGGTCAAGCGTTTGGAGGTAGAAAATACGAGATGCTTGGCATA
TATCTCCAGAGATCCACCGTGCTACTCTCTCTCACGGGGGTTCTCCTAACGTTAATCTACGTCTTCTCCAAACCCATTTTGCTTTT
CCTAGGAGAGTCGCCGGAGATAGCTTCCGCCGCGTCTATCTTCGTCTACGGCCTAATACCTCAAATCTTTGCCTATGCCGTGAACT
TCCCGATCCAAAAGTTCCTACAGTCGCAAAGCATCGTTGCTCCGAGTGCTTACATCTCAACGGCCACGCTCTTCGTTCACCTTCTC
TTAAGCTGGCTCGCTATTTACAAGCTTGGCATGGGGCTTCTTGGAGCCTCGCTTGTGCTCAGCCTCTCGTGGTGGATTATAGTGGT
GGCTCAGTTTGTTTACATTGTGACGAGTGAACGGTGTCGTGAGACGTGGAGAGGGTTTAGTGTGCAAGCGTTCTCGGGGTTACCGA
GTTTCTTTAAACTCTCTGCTGCCTCTGCCGTGATGCTCTGCCTTGAGACTTGGTATTTTCAGATTCTCGTGCTTCTCGCCGGACTT
CTCGAGAATCCAGAGCTTGCTCTTGATTCTCTCTCGATTTGCATGACGATTTCAGGATGGGTGTTCATGATATCTGTTGGATTCAA
TGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGAAACCCTAAATCAGCATCGTTTTCTGTTATCATCGTCAACATTT
ATTCGTTAATCACATGTGTGATCTTAGCCATTGTGATTTTGGCATTTCGTGACGTCTTGAGCTATGCTTTCACCGAGGGTGAAGAA
GTTTCGGCCGCTGTTTCTGATCTTTGTCCGCTTCTTGCCTTAACTCTTGTCCTCAATGGAATCCAACCTGTCCTTTCCGGTGTGGC
GGTTGGATGCGGTTGGCAAACGTTTGTGGCAAAAGTTAACGTTGGATGTTACTACATTATCGGAATTCCTCTTGGGGCTCTCTTTG
GGTTTTACTTTAAGTTCGATGCCAAGGGTATATGGACGGGAATGATATGTGGAACTCTTATACAAACGGTTATTTTAGCATGGGTC
ACGTTTCGTACAGACTGGACAAAAGAAGTGGAAGAGGCTTCTAAAAGGTTGGACAAATGGAGCAACAAGAAACTAGAAGTGGTTCC
CGAATGAACAGATTGGATAACCGGTTCAAATGCTCAAGTTAACCGGTGAGCTGGTATAATAGGACATGGATATTATCCCTCAGACC
TCAATTCGATATAAGCTTTCATTAATTTATGTGCTTGCTTAAAATAAATAACAATTAGGTGATGTATCTTGTATGTCAAATTACAA
TGTTAATTGCTTTCCTATTAATGATTCAACCTATGGTTAGCAGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883313 mate efflux family protein [Arabidopsis lyrata subsp. lyrata] | 2350 | 2e-262 |
| NP_188806 mate efflux domain-containing protein [Arabidopsis thaliana] | 2341 | 2e-261 |
| AAM20595 integral membrane protein, putative [Arabidopsis thaliana] | 2336 | 8e-261 |
| BAJ34540 unnamed protein product [Thellungiella halophila] | 2319 | 7e-259 |
| XP_002321125 predicted protein [Populus trichocarpa] | 1990 | 1e-220 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LYT3 Protein TRANSPARENT TESTA 12 | 1226 | 2e-133 |
| A7KAU2 Multidrug and toxin extrusion protein 1 | 609 | 6e-062 |
| A4IIS8 Multidrug and toxin extrusion protein 1 | 604 | 2e-061 |
| Q9USK3 Uncharacterized transporter C4B3.13 | 598 | 1e-060 |
| Q8K0H1 Multidrug and toxin extrusion protein 1 | 594 | 3e-060 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LVD9 At3g21690 | 2341 | 1e-261 |
| Q8LPI3 Integral membrane protein, putative | 2336 | 5e-261 |
| B9IAF1 Predicted protein | 1990 | 7e-221 |
| B8AL74 Putative uncharacterized protein | 1882 | 2e-208 |
| B6TBH9 Transparent testa 12 protein | 1881 | 3e-208 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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