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Information for unigene UN20533
| FASTA Sequence |
| Unigene ID: UN20533 | Length: 1165 |
| SNP | GGACCAAAAAAGTCGTCTTCTCGTTTCTTTTCTCAGTAGAGGAAAATGGATTCTCGAAATCTTCTTCTCGCGTTATCGCTGTCTCT
TATCCTGATTTTCCCTCCAATTTCGTCTGCTTCCATCAGATTCCTCCCTCGATGGAGTAGTAATAACAGAGAAGGGTCAGTGATTA
AGCAGAAGACAAGTGGTTCGTCTCTAGTTATTGATCCAAGTCGTGTCACTCAGCTCTCTTGGACTCCTAGGGTGTTTTTGTACAAG
GGACTTCTTACTGATGAGGAATGTGATCATTTCATCAATTTGGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTC
AGGTGAGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAAAGACAGGATGATGTAGTTGCTAATGTCGAGG
CAAAACTTGCCGCGTGGACCTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGAATGGTCAGAAATATGAA
CCGCATTTTGACTACTTTCACGACCAAGTAAACCTACAGCTTGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAACGT
CGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAAGGGCGCAACAGCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAAC
AAGGTTATGCAGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCAATCTCCATCCAAATGCAACAACAGATCCGAGCAGCTTA
CATGGAAGCTGTCCAGTGGTTGAGGGAGAGAAATGGTCAGCAACCAGATGGATTCATGTGAAGTCATTCGAAAGACCTGTTTCCAG
GACAACTGGGTGTGTGGACGAGAACGAGAGCTGCGAGAAATGGGCAAAGGCAGGGGAATGTCAGAAGAATCCAACGTACATGATGG
GTTCAGAAACAGACCAAGGTTACTGCGGAAAGAGCTGCAAAGCCTGCTCATCTTAACAACAACCAAGTAAAAAAATCAAAGGTCTT
ATTAAAGGATTGAAAACTTTTTGTGTGTAGAGAAGAAACCTTTGGTCTATATAAGGAAATATGTTTGAACAAATAATAAAAAAGAA
TAATTATGATGCTATGTTCTTAATAAGCAGCTTCTTGTTTCATGTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002877111 oxidoreductase [Arabidopsis lyrata subsp. lyrata] | 1415 | 3e-154 |
| NP_566838 prolyl 4-hydroxylase [Arabidopsis thaliana] | 1412 | 6e-154 |
| AAL57673 AT3g28480/MFJ20_16 [Arabidopsis thaliana] | 1409 | 1e-153 |
| BAB02864 prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis thaliana] | 1358 | 1e-147 |
| NP_001189994 prolyl 4-hydroxylase [Arabidopsis thaliana] | 1342 | 8e-146 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q10576 Prolyl 4-hydroxylase subunit alpha-1 | 305 | 6e-027 |
| Q20065 Prolyl 4-hydroxylase subunit alpha-2 | 293 | 1e-025 |
| Q5ZLK5 Prolyl 4-hydroxylase subunit alpha-2 | 223 | 2e-017 |
| Q60716 Prolyl 4-hydroxylase subunit alpha-2 | 216 | 1e-016 |
| P54001 Prolyl 4-hydroxylase subunit alpha-1 | 215 | 2e-016 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L970 Prolyl 4-hydroxylase, putative | 1412 | 4e-154 |
| Q8VZD7 AT3g28480/MFJ20_16 | 1409 | 9e-154 |
| Q9LSI6 Prolyl 4-hydroxylase alpha subunit-like protein | 1358 | 7e-148 |
| B6ZN58 Type 2 proly 4-hydroxylase | 1140 | 1e-122 |
| B9IJQ5 Oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1131 | 2e-121 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G28480.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1413 | 2e-156 |
| AT3G28490.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1162 | 2e-127 |
| AT5G18900.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 931 | 1e-100 |
| AT3G06300.1 AT-P4H-2 (A. THALIANA P4H ISOFORM 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors / procollagen-proline 4-dioxygen | 900 | 5e-097 |
| AT4G35810.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 641 | 6e-067 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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