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Information for unigene UN20535
| FASTA Sequence |
| Unigene ID: UN20535 | Length: 1509 |
SSR | | GGGAAGCTCGAAAACTGATAAAAAGAAGAAGGCTGATCCACCATTAATGCCACCCACCACCCAACGGCAAACGCCTTTTCTCACAC
TCTCTCATGTTTGAGACTTGAGAACCAATAGAAACCCAAAAAAGTGTGATATATAGTTGGACATTGCATAAAGGTTCCCATTTTTA
GTTCTCTCTCTCTCTCAGAATCACCACTCAATCATGGGGGCTTGCTTGAGTGCTCAGGTCAAAGCTGAGAGCCCAGGGGCGAGTCC
AAAGTTCAAAGATACTGGAAGTCTTGGGAGCAAGTCTTCATTTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATCTTAC
AGTCTTCAAACCTCAAGAGTTTCTGCTTTGCTGAGCTCAAATCAGCAACTAGGAATTTCAGACCAGACAGTGTGCTTGGTGAAGGT
GGATTCGGTTGCGTGTTCAAAGGATGGATTGATGAGAAGTCTCTCACCGCCACAGAACCAGGCACTGGTTTGGTTATTGCCGTCAA
AAAGCTTAACCAAGATGGTTGGCAAGGTCACCAGGAGTGGCTGGCTGAAGTGAACTACCTAGGCCAGTTTTCGCATGGACACCTAG
TGAAGCTGATAGGTTATTGCCTAGAGGATGAGCACCGTCTTCTTGTTTACGAGTTCATGCCACGTGGTAGCTTAGAGAATCATCTT
TTCAGGAGAGGGTTATATTTCCAACCGTTATCTTGGAAACTCCGGTTGAAAGTAGCTCTTGGTGCTGCGAAGGGACTTGCCTTTCT
TCACAGCTCCGAGACAAGAGTGATATACAGAGACTTCAAGACTTCTAACATCCTTCTTGATTCGGATTACTACGCAAAGCTTTCTG
ATTTTGGGTTGGCCAAGGATGGGCCAATAGGAGATGAAAGCCATGTCTCTACAAGAGTCATGGGTACACATGGATATGCAGCTCCT
GAGTACCTCGCAACCGGTCATCTAACAACAAAGAGTGATGTCTATAGCTTCGGGGTTGTCCTTCTGGAGCTGTTGTCTGGTCGTAG
AGCCGTGGACAGAAACAGACCATCGGTAGAGAGGAACCTTGTGGATTGGGCTAAACCATACCTTGCAAACAAAAGAAAGATATTCA
GAGTGGTCGATAATCGTCTTCAGGATCAGTACTCTATGGAAGAAGCATGTAAAGTGGCTACTCTGTCTCTGAGGTGTCTCACTACG
GAGATTAAGCTCAGACCAAACATGAGAGAAGTGGTTTCGCAGCTTGAGCATATTCAGTCTCTAAATGCGTCTAGAGGAGGAAACGT
GGATAGGACGGAGAGAAGAAGAGTGCGTATGAGAAGTGACAGTGTTGTTACCAAAAAACCTGATGCAGTTTTGTTCGGCAGACCGC
TGTGGGCTGTACAGTTGTTGCTTATCCTCGCCCGTCGCCTCACCGCTGTGTGTCTGAGAATAATAACACGTCTGTGTTCTGATAGG
ACATGTAAGTTCTGATATCATGTCATGTGTATGTGATTCGGATGTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892407 hypothetical protein ARALYDRAFT_470784 [Arabidopsis lyrata subsp. lyrata] | 1805 | 2e-199 |
| NP_172237 protein kinase APK1A [Arabidopsis thaliana] | 1794 | 4e-198 |
| NP_001184929 protein kinase APK1A [Arabidopsis thaliana] | 1747 | 1e-192 |
| NP_001031439 protein kinase APK1B [Arabidopsis thaliana] | 1641 | 2e-180 |
| NP_001031440 protein kinase APK1B [Arabidopsis thaliana] | 1627 | 1e-178 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q06548 Protein kinase APK1A, chloroplastic | 1794 | 2e-199 |
| P46573 Protein kinase APK1B, chloroplastic | 1641 | 1e-181 |
| P43293 Probable serine/threonine-protein kinase NAK | 1307 | 5e-143 |
| O48814 Serine/threonine-protein kinase BIK1 | 1246 | 6e-136 |
| O49840 Protein kinase 2B, chloroplastic | 1209 | 1e-131 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7GAG3 Putative uncharacterized protein At2g28930 | 1641 | 2e-180 |
| Q2V447 Putative uncharacterized protein At2g28930.3 | 1627 | 7e-179 |
| Q2V448 At2g28930 | 1584 | 6e-174 |
| B5L8D2 Protein kinase 1b | 1426 | 1e-155 |
| B9GJM9 Predicted protein | 1418 | 1e-154 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G07570.2 APK1A; kinase/ protein serine/threonine kinase | 1794 | 2e-200 |
| AT1G07570.1 APK1A; kinase/ protein serine/threonine kinase | 1794 | 2e-200 |
| AT2G28930.2 APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase | 1641 | 8e-183 |
| AT2G28930.3 APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | 1627 | 4e-181 |
| AT2G28930.1 APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | 1584 | 3e-176 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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