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Information for unigene UN20552
| FASTA Sequence |
| Unigene ID: UN20552 | Length: 1273 |
SSR | | GGAAATGAGTGGCTTCTAGGGTTTCGATTTGTATGTTCATCTCGTGTCTTCTTCTACTTCTTCTTCTTCTTCACTCTCTCTTCCTC
GCTTCTTAGAGACAGTCAACGTTCGTTTAAAAAAAAAATTACTGAAATTGCTGTTTCAGACCGATTTCATTACTGTTCTTTCAATT
AATTTGTGGGTTTGTTTAAAAATGGGTCTTTCAAGCGATTCTGAGTTCGTTTAAGCACACTGACAAAGTTTTTTTCCATGCGTGAC
AAAGTTGCAGAGACTTGCTGTTAAGCGGTTTGTGCAGCAAGGCTTCCAAGAAACTTAAAAGATGGACAGTGAGGGAGACATTGGGA
AGGAATCTCTCCTTCTGATAAAACAAGGAGCTGAAGCTAGGGTGTTCGAGTCTACATTTGTGGGAAGAAGGTCCATCGTTAAAGAG
CGATTCTCGAAGAAGTATAGACACCCGGTTCTGGATGTGAAACTCACACTCAAACGATTGAATGCCGAGGCAAGGTGTATGACGAA
AGCAAGAAAGCTCGGAGTTTGTACTCCAGTCCTCTACGCGGTGGATCCTCTGCTTCATTCCTTGACGCTCGAGTACATCCAAGGCG
TCTCTGTCAAAGACGTTTTCCTAGAGTTTGGTGCCAATGGGATCGTCGAGGAACAACGGTTGGATGATATCGCTGCTCAGATTGGT
GAGGCCATCGCTAAGCTCCATGATGGTGGCTTGTCTCACGGTGACTTGACCACTTCAAACATGTTACTCAGAAGTGGTACAAATCA
GCTGGTACTAATTGATTTCGGGTTGAGTTTCACGTCGACCTTGCCGGAAGACAAAGCTGTTGATCTATATGTACTTGAAAGAGCCT
TGCTCTCAATGCATTCTTCATGCGGAAACGTGATGGATCGTATAATGACAGCATATAGGAAGTCCTCAAAGCAATGGTCAGCCACG
TTTAACAAGCTCGCACAAGTGAGGCAACGAGGAAGAAAGCGTACTATGATTGGATGAGCCAAAGATCTCCTAGTAACTTGTGGCTA
TAAAGCTACCCCCAAAACTTGCTATTTGGTTCAATAGAGGGTAGGAGGATTATGCCTTTGAATGTTTAGCACATGTGCACTGCCTC
TGTTTTTAGTATTTTGATTACAATCCAAACAGACTATCGTTGTCGTTTCGCAGCCAGTGTGTTAGAGAGTGAGAGCACATTGTTAG
CTACTTTTCTTTATTTGTGTTTGTTAACTAGTGATAATGCCTTCAGTACACACACGCACTTAACCTGGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002886410 ATP binding protein [Arabidopsis lyrata subsp. lyrata] | 1046 | 2e-111 |
| NP_568482 TP53 regulating kinase [Arabidopsis thaliana] | 1037 | 2e-110 |
| XP_002300825 predicted protein [Populus trichocarpa] | 977 | 2e-103 |
| XP_002887966 ATP binding protein [Arabidopsis lyrata subsp. lyrata] | 972 | 7e-103 |
| XP_002307599 predicted protein [Populus trichocarpa] | 971 | 9e-103 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q96S44 TP53-regulating kinase | 482 | 2e-047 |
| Q54W07 Probable serine/threonine-protein kinase BUD32 homolog | 477 | 7e-047 |
| Q99PW4 TP53-regulating kinase | 470 | 5e-046 |
| Q9P7N1 Serine/threonine-protein kinase bud32 | 412 | 3e-039 |
| Q4HYC1 Serine/threonine-protein kinase BUD32 | 245 | 6e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94K14 Putative uncharacterized protein At5g26110 | 1037 | 1e-110 |
| B9GSK7 Predicted protein | 977 | 1e-103 |
| B9H8B4 Predicted protein (Fragment) | 971 | 6e-103 |
| B9SFH4 O-sialoglycoprotein endopeptidase, putative | 950 | 2e-100 |
| C6TNL5 Putative uncharacterized protein | 940 | 2e-099 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G26110.1 ATP binding / catalytic/ protein kinase | 1038 | 6e-113 |
| AT5G26110.2 ATP binding / protein kinase | 770 | 7e-082 |
| AT1G08120.1 LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / catalytic/ protein kinase (TAIR:AT5G26110.1); Has 380 Blast hits to 380 proteins in 166 species: Archae - 115; Bacteria - 0; Metazoa - 110; Fungi - 39; Plants - 20; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | 239 | 3e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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