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Information for unigene UN20557

FASTA Sequence
Unigene ID: UN20557Length: 915 SSR 
GGGCGAACATTGAATCGGATACCATTCCCAATCTGAATCTGCAACTCTCTTACCTTCACTGCGTATGTAGTAGTAGTAGTAGTACC
CCCTCACTTCTCACAGCTTCCCTTTCGAAGATTTCAACTCTACCCTCACTCTTCCGCATCGTTTGGGTTTCCAACTTTCTCTAAAT
AGATTATGGAAGGAAGACGGATTACAGCTAGCCCTAGACCTTGCAGTGGAAGAAGAAGAGTCGCCGTCGCGGCTAAAAAGAGACCT
CGTCCCGATGGGTTCGTCAGCAGCGTCAAAAAGCTTCAGCGAAGAGAAATCTCGTCTCGTAAAGATCGAGCTTTCTCCATCAGCAC
TGCCCAGGAGAGATTCCGCAACATGCGTCTCGTGGAACAATATGATACTCATGATCCCAAGGGACATTGTTTAGTTGCATTGCCGT
TTTTGATGAAGAGAACTAAAGTTATTGAGATTGTTGCTGCGAGGGACATTGTCTTTGCGCTTGCTCACTCTGGTGTCTGTGCAGCT
TTCAGTAGAGAGACGAATACAAGGGTATGCTTTTTGAATGTGAGTCCAGACGAAGTCATTAGGAGCTTGTTCTACAACAAGAACAA
TGATTCTCTCATCACTGTTTCGGTTTATGCTTCTGACAATTTCAGCTCTCTGAAATGCAGATCCACTAGAATAGAGTATATTCTGA
GAGGTCAGCCGGATGCAGGGTTTGCCCTTTTTGAGTCTGAGTCGTTGAAGTGGCCTGGTTTTGTAGAGTTTGATGATGTAAATGGG
AAGTTCTTACGTATTCTGCGCGGGACAGTGTGTACAAGTTTTGATCTGAAAACTATACCATGTTGTATTCGATATCAGATAAAATG
TCAAGAATTAAATCAGTCCAGGATAATGTATGATCTTCAAAGAGCTACAAGTCAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877961 hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata]9662e-102
NP_566994 transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana]9653e-102
NP_181397 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]9062e-095
AAC67355 unknown protein [Arabidopsis thaliana]9017e-095
XP_002881605 hypothetical protein ARALYDRAFT_903098 [Arabidopsis lyrata subsp. lyrata]9009e-095

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5G8 AT3g54190/F24B22_1509652e-102
Q84J57 Putative uncharacterized protein At2g386309061e-095
Q9ZVI5 Putative uncharacterized protein At2g386309015e-095
B9IGY6 Predicted protein8925e-094
B9S1V3 Putative uncharacterized protein8882e-093

Arabidopsis top hits (Blast detail)Scoree value
AT3G54190.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38630.1); Has 77 Blast hits to 77 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).9812e-106
AT2G38630.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54190.1); Has 79 Blast hits to 77 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).9122e-098

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
101  33%

Unigene MembersMember information