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Information for unigene UN20564

FASTA Sequence
Unigene ID: UN20564Length: 2271 SSR 
AATTGTTTTCTTTTGTTTTGAATCCAGATCCTTATTATTCTCTCCTCTCCTCGGGCCTTTTGCTTTCGATCTGATTGATTCATGGC
AACGACTCCTCCATCACACCCCACAGATCTTATTACTTCAGAGGAGCAACCTGTTAATCTGGACATCATGAAGGAGCAGACTGTCC
CGGCAAACAACGAGACATCATCAGCCTCTTTTAAGTCCTCTCAGGAGCCTGCGGTTGTAGTTCATCCATCAAAAGTTGCTCCACTC
TCTGCACCTTATGGTTTGTCAGGTGATTTTGCTGCACACTTGCCTAGCAGCATCCTCTCTCCTCAAGCACAAGGCTTTTACTATAG
AGGTTATGAAACCCCCACAGGGGAATGGGACGAGTATTCTTCCTACGTCAATGTTGAAGGATTGGACATCAACTCTCCTGTTGGCT
TCAATGAGAATGCTTCTCTAGTCTACCAAACAGGATATGGATACAACCCTCAGATGCCATACGGACCATACTCCCCTGCTGCAACT
CCCTTACCTTCTGAGGCCCAGCTGTATTCTCCGCAGCAGTTTCCGTTTTACCAGCAGGTAGTTCCTCCCAGCATGCAATATATTTC
TTCCCCAACTCAGCCAGACCTCACCAGCCTCGTTGACCAACAAGGTGGTGATAACATAGGACCACCACCACCACGACCGTCCTACC
AACCTCACCCTATTGGACCGTTTAATGGAAACCAGACAAACCTTGGTTTCCCTGAGTGGCAGCAAGGTTTTGACGGGGGGATATGG
TCTGATTGGTCCAAGCCTTCTGATATGCACAGACATTCTTCTCCTTTTTCGCCGGCTTTGTCTCCTCAGCCACTTGGTTCTTTTGG
ATCATATGGCCACAACATTCCCATGGGGTCACAGAGACAGGGATCGTTTTACGGTCGTGGCCAGGGCTCTAACTATGGAAGCAGAC
TAAATACTTATATGGGTATGGGGAACCAAGGCTGGATTGGCGTTGACAACACTCGGGGGCGTGGAAGGGTTAGTGATCCATCCCTT
GGTGGGGGTTATAATGGTAACTATGATATCCTCAACGAGCAGAACCGAGGACCAAGGGCTTTGAAGCCCAAGGCTCAGGTCTCAGA
GGAGCTTGATTCTTCTGCTGATACTAAGAAAAATAGCAATGGCAGTCCCAAAGAGGAAGCCAACAACAGTAATCCTGATTTTGTCA
CTGACTACAGTGACGCTAGGCTCTTCATAATCAAGTCTTACAGTGAAGACAACGTGCACAAGAGCATCAAGTACAATGTATGGGCT
AGCACTCCTAACGGCAACAAGAAGCTTGATGCTGCTTACCGTGAGGCCAAGGATCAGAAAGAACCGTGCCCGGTGTTTCTTCTGTT
CTCTGTAAACGCTAGCTCTCAGTTCTGTGGAGTAGCGGAGATGATAGGACCTGTGGATTTTGAGAAGAGCGTTGATTACTGGCAAC
AAGACAAATGGAACGGACAGTTCCCGGTGAAGTGGCACATCATCAAAGATGTTCCAAACAGTCAGTTCCGCCACATTATATTGGAA
AACAATGACAATAAGCCTGTGACGAACAGTCGAGACACTCAAGAAGTGAAACTAGAACAAGGCATTGAGATGCTGAAGATTTTCAA
GAACTATGATGCTGAGACTTCGATCTTGGATGATTTTGGGTTTTATGAAGAGAGGGAGAAGATAATTCAAGAACGGAAGGCAAGAA
GACAGCCAAGCTTGCCATCTGCAGGAGGAGGAGGAGAAAACGAACATAATAAACCTGCTGCTGCTTCGGCTGCATTGCAGACAGAC
TTTATCAAGAACATGTCTAAAAGTTTTGCTCAAGTCGTCCGCTTGGAGGAGGGAAGCAAAGAAGCAGGGAAGGCAAGTTCATCTCC
AGATGCAATCGCAGCAACATTAGCAGTCTCTTCTGGTTAATCCAACTAGTAAGTAAAAGGCACAATCAATTAGCAAAGACTTTATG
TTTTTTTTCAGTTTCCATAATGATCTTTTGTTTGTTCTAAGAAGGGTGGTGGGTATTCAAATGGGATTTTAAGTCTGGCCTGGTCT
GGTTTTTGTGTAAAGTAAGCTTCTTTTCGATGGGGGTATTTAAGCCATTTTGATTCATTTCCCTCTTTTCAAAGTTATGTACTCTC
TCTCTTTGGGGTTGATAGAAGAAGAAGAAGATGTGTATCAGAGACAATATAAATGTTGCTCTTGTAAAGTAGCTTCATATGTCTTT
GCAGGCAGTATTTAATAAAAGATGCAGATTACACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002882804 hypothetical protein ARALYDRAFT_478675 [Arabidopsis lyrata subsp. lyrata]15464e-169
BAB02516 unnamed protein product [Arabidopsis thaliana]15285e-167
NP_187912 uncharacterized protein [Arabidopsis thaliana]15285e-167
NP_001062472 Os08g0556000 [Oryza sativa Japonica Group]12642e-136
EAZ43623 hypothetical protein OsJ_28244 [Oryza sativa Japonica Group]12642e-136

Swiss-Prot top hits (Blast detail)Scoree value
Q0VCZ3 YTH domain family protein 25452e-054
Q9Y5A9 YTH domain family protein 25443e-054
Q4R5D9 YTH domain family protein 25443e-054
P59326 YTH domain family protein 15344e-053
Q7Z739 YTH domain family protein 35326e-053

TrEMBL top hits (Blast detail)Scoree value
Q0WR25 Putative uncharacterized protein At3g1306015283e-167
Q9LDZ8 Gb|AAF35955.115283e-167
A3BVN4 Putative uncharacterized protein12641e-136
Q6Z0T2 Os08g0556000 protein12641e-136
C5YNA9 Putative uncharacterized protein Sb07g02450012604e-136

Arabidopsis top hits (Blast detail)Scoree value
AT3G13060.2 ECT5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.1); Has 1007 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 8; Metazoa - 528; Fungi - 103; Plants - 235; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).15282e-169
AT3G13060.1 ECT5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.1); Has 994 Blast hits to 952 proteins in 145 species: Archae - 0; Bacteria - 8; Metazoa - 526; Fungi - 103; Plants - 230; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).12834e-141
AT1G55500.1 ECT48264e-088
AT5G58190.1 ECT107881e-083
AT5G58190.2 ECT107881e-083

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  20%
 
181  20%
 
81  20%
 
62  40%

Unigene MembersMember information