RadishBase

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Information for unigene UN20571

FASTA Sequence

Unigene ID: UN20571	Length: 924	SSR
GACAGAACAGTAAAGCAAAACAAAAGAATCATTCGATCCTCTCTCTCTCTCTCTCACACACATCTCATCTCATGGCTGCTAGCTAC AAAGTCGACGAAGAGTACGATTACCTCTTCAAGCTCGTCTTGATCGGCGACTCCGGCGTCGGCAAATCGAATCTACTATCGAGATT CACGAAGAACGAGTTCAACCTCGAATCAAAGTCTACTATTGGCGTTGAGTTCGCGACCAAGACGCTCAGAGTCGATAGCAAAGTCG TCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGATACCGAGCAATCACAAGTGCTTACTACAGAGGAGCTGTAGGTGCTTTA CTTGTCTACGACGTGACAAGGCACTCGACGTTTGAGAACGCAGCGAGATGGCTAAGGGAGCTACGGGGACACACGGATCCAAACAT AGTGGTGATGCTTATAGGGAACAAGTGCGATTTGCGTCACTTGGTAGCAATAAAAACAGAGGAAGCTAAAGACTTTGCTGAGAGAG AGTCTCTCTATTTCATGGAGACATCTGCGTTAGATGCAACCAACGTTGAAAACGCCTTCACTGAAGTGTTGACTCAGATTCATAAG ATAGTGAGCAAGAGAAGCGTGGATGGATCGAACAAAGAAGAAGGAGGGTCTTCGTCTGGTTTACCAAAGAAAGGAGAGACTATTAA CGTCAAGGAAGATGGATCTGTTTTTAAGAGAATGGGTTGCTGCTCTAACTAGAGTGTGATTATAGATTTGGTTTGGTCGGATTAAG GTGGCTCGTGCAATAAAATAAAAATCAACTGTTTATGCTTTGGTAACTTTCGCCTGTAAGGGCTTTTAAAATTGAATGTACATTAT CATTATCTTGTCTTTCCACCACTTATGAACTTGTAATAAACTAGACGAATGCAAATCTTCACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172128 Ras-related protein RABA1a [Arabidopsis thaliana]	980	5e-104
XP_002892339 hypothetical protein ARALYDRAFT_887842 [Arabidopsis lyrata subsp. lyrata]	974	2e-103
Q40194 RecName: Full=Ras-related protein Rab11D	932	2e-098
BAA02114 GTP-binding protein [Pisum sativum]	908	1e-095
AAN03473 small GTP-binding protein [Glycine max]	899	1e-094

Swiss-Prot top hits (Blast detail)	Score	e value
P28185 Ras-related protein RABA1a	980	2e-105
Q40194 Ras-related protein Rab11D	932	8e-100
Q01111 Ras-related protein YPT3	886	2e-094
Q40195 Ras-related protein Rab11E	862	1e-091
P40393 Ras-related protein RIC2	853	1e-090

TrEMBL top hits (Blast detail)	Score	e value
Q08151 GTP-binding protein	908	8e-096
Q8LJR5 Small GTP-binding protein	899	8e-095
C6SX31 Putative uncharacterized protein	898	1e-094
A5BUD1 Putative uncharacterized protein	892	5e-094
Q9SCB1 Rab11 GTPase	877	3e-092

Arabidopsis top hits (Blast detail)	Score	e value
AT1G06400.1 ARA-2; GTP binding	986	4e-107
AT5G45750.1 AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding	841	3e-090
AT4G18800.1 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding	818	1e-087
AT1G16920.1 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding	812	6e-087
AT5G60860.1 AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding	799	2e-085

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	3			43%


11	1			14%


8	1			14%


12	2			29%

Unigene Members	Member information