RadishBase

| | | |

Information for unigene UN20578

FASTA Sequence

Unigene ID: UN20578	Length: 1433	SSR
GGAAGCTGAGAGAAACGAGGTTGCTCTGCGTGATCATCGGAGAGAGAGAGATGTCGAGCTCATCGCAGTTCAGGTACACGCAGACG CCGTCGAAGGTGGTGCACCTTCGGAATCTGCCGTGGGAATGCGTGGAAGAGGAGCTCATCGACCTATGCAAACGATTCGGAAAGAT CGTCAACACCAAGACCAATGTCGGCGCCAATCGCAGCCAAGCCTTCGTCGAATTCGGTGAAGTGAATCAGGCTATATCAATGGTAT CGTACTATGCTTCGTCTTCAGAGCCTGCACAGATTCGAGGGAAAACCGTTTATATACAGTACTCTAATCGTAATGAGATTGTGAAC AATCAGAGTCCTGGTGAAGTCCCTGGCAATGTCCTCTTGGTTACCTTTGAAGGAGTCGAGTCTCACGATGTCAGCATCGATGTCGT TCATCTGGTGTTTTCTGCTTATGGCTTTGTGCACAAAATTGCCACTTTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAGTTTA CTGATGTGGACACTGCTTTAGCGGCAAGGACTGCGCTGGATGGCAGAAGTATACCAAAATATCTGCTTCCAGAACATGTAGGTTCT TGCAATTTGCGAATGTCTTATTCAGCTCATACTGATCTAAATATCAAGTTTCAGTCCCACCGCAGCAGGGACTACACAAATCCATA CCTTCCAGTGAATCAAACCGCTATGGATGGTTCTATGCAGCCTGCTTTGGGTGCTGATGGAAAGAGGGTAGAAACTCAGAGCAACG TCTTGCTTGCGTTGATTGAGAATATGCAGTACGCTGTCACCGTGGATGTTCTTCACACGGTGTTTTCCGCTTATGGAACTGTGCAG AAGATTGCAATATTTGAGAAAAATGGTTCAACGCAAGCCTTAATTCAATACTCTGACATACCAACGGCGACAATAGCGAAAGAAGC ACTGGAAGGACACTGCATATATGACGGTGGCTACTGTAAGCTTCGACTAACATACTCTCGTCATACTGATCTCAATGTTAAGGCAT TTAGCGACAAAAGCAGAGACTACACACTTCCTGATCTAAGCCAACTGGTGGGGCAAAAAGTTCCAGGAGTGGCTGCAGCTAGTGGG CCAACAGATGGTTGGCACAATGGGCAGGTGCAGACTCAATACGCGGGAAGTTCATATATGTACTCACCAGCTGATCCCACAGGAGC TTCACCTTCTTCTGGTCATCCTCCTTACTATGGTTGATCCATATACTCTGTTTTCTACTTTATATAAATTTCGGATTATGTTAAAG ACTGAACTGGGAGAATGGGAGTTTCCATGTTTTAGGTTTTTGTTAAAAGTGTGATTGTTCTTTTATTTGGTTAAATAGACGTTTAA GTGGGAAAACCAATAACATTTATAGTATAATTTATAAACTTTATGTGTTTTGTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884293 polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]	1817	8e-201
NP_186764 polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]	1788	2e-197
AAC62015 polypyrimidine tract-binding protein homolog [Arabidopsis thaliana]	1715	6e-189
XP_002283748 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]	1536	3e-168
ABK95931 unknown [Populus trichocarpa]	1533	7e-168

Swiss-Prot top hits (Blast detail)	Score	e value
Q9MAC5 Polypyrimidine tract-binding protein homolog 1	1788	8e-199
Q9FGL9 Polypyrimidine tract-binding protein homolog 2	1325	4e-145
Q6ICX4 Polypyrimidine tract-binding protein homolog 3	397	2e-037
Q29099 Polypyrimidine tract-binding protein 1	269	1e-022
Q91Z31 Polypyrimidine tract-binding protein 2	262	7e-022

TrEMBL top hits (Blast detail)	Score	e value
B9DFT7 AT3G01150 protein	1788	1e-197
A9PHS8 Putative uncharacterized protein	1533	5e-168
Q2XTB3 Polypyrimidine tract-binding protein-like	1493	2e-163
Q38JI2 Polypyrimidine tract-binding-like	1493	2e-163
B8AQL8 Putative uncharacterized protein	1461	1e-159

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01150.1 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding	1789	5e-200
AT5G53180.1 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding	1325	3e-146
AT3G01150.2 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding	1087	1e-118
AT5G53180.2 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleotide binding	829	1e-088
AT1G43190.1 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	397	1e-038

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			25%


9	4			50%


6	2			25%

Unigene Members	Member information