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Information for unigene UN20580

FASTA Sequence
Unigene ID: UN20580Length: 2162 SSR 
GCGATCGTAGCTATCGATCAAAATTGAGGACAGTTACCGACTCACATGGTTCAAGACAAGATAGAGTGATTCATCCTCGAGACTGA
GGAGTTTATCTGCAAAGAAGGTAGCTAATACTTCCAAGATGCATGTGTCATCACCAAAATCTGGTAGATTGAATGCCACACAGGAG
GACAACGCTGAAGCTTCTAGAGAAACATGGGATGGAACTAGTCCTATTGGCTCTTCAAGTACAGGTGGAAGAATGTCCCACATCAT
ACAGAAACGGTGCAAAATCGCCATTAGCAAACTCCAAAGAAGAATCGACAAGGAAGGTCAGCAGATTGTGCCTATGCTGACAAATC
TGTGGAAGAGAATTCAGAATGGTTATGCAGCTGGAGGTGTGAATAATCTTTTGGAACTGCGAGAGATAGATCAGCGGGTGGAAAGG
CTAGAGTACGTAGGAGTTATGGAACTCGCATCTGACGTGCAGTATATGCTAAGGGGAGCAATGCAGTTCTATGGATTCTCACACGA
GGTGAGATCTGAAGCAAGGAAGGTTCACAATCTGTTCTTTGATCTACTGAAAAGGTCTTTTCCAGACACGAATTTTCAGGAAGCAA
GGAATGCTCTTTCCTTCTCTGGTCCAACCCCAACTTTGGTGTCTACATCTTCCCCAAGGGGAGCAGGTATTAGGAGGCCAACGCCG
GTAGATGAGGAGGAACCTGAGCCAAGCTCTCCTCAGAGACGTCAACAACGCGAGAACTCAAGGATCAGAGTACAGATACCTCAGAA
AGAAACAAAGCTTGGCGGGTCATCAAGCCACACCGATGAGTCTCCAGTTTTAGCTCATCCAGGGGAACTAGTGATCTGCAAGAAGA
AGAGGAAAGACAGAGAAAAGTCTGCTCCAAGAACCAGCAGCCCGGTTTCACCTCAGGCTATGATAGGTCGTGGTCTCAGAAGTCCA
GTGTCTGGTTCAGTTACAAGGGAAACAAGGCTAGCAGCTCAAGCCACTCATCCAAACAACAGCGGCGCGGCTGGTGACTCAGTTGG
ATGGGCTAATCCGGTGAAGAGGCTAAGAACAGATTCTGGTAAAAGAAGACCGAGTCATTTGTAGACAGAGTAAGCCAAGCCTCTGT
TGTTGTCTTTAGTGGTTGTTGGATGTGATTGCAATGTAGCAGCGAGTCTTTGACCTTTAGTTAACAAATAATTCTCTATCTATTTA
GAAGATAAGTCCTATTGTCTGGAGGCACTATCCCCCATCTTTAGAGATGGTCAATGTATAAAAAAAATTGAGATATGGATTCATGT
TTAATTTGTTGTAAAAGATTCTGCATATTGTTGTTACATTTTATTTACAGTTGAAGCAAATGATTATTTTCAATATTCCTAAAGAA
TTAAAATAGTGTTTACAAATTTACAGAGGAGTGATTTTTTTCTCCTCTACGGAATGAACATCAATGGGTTTATATATATGGAAATG
AAGTGCAAAGAAAGGTTGATTTGTAACACACACACAAGTCATCATCAAGGATCTGCTTTTCCAGCGATTTCATCGTTGTCATCCGA
GTCTGAACCACGTTCGCTCATGCTATCATCATCATCGTCATCTTCATCATCACTTAAATCCTCAGGTGCTCCTATGTCCTCTGGTT
TAGCATATGCTTTGCAGTACTCTTTGACTTTCTTCTCATAGGCTGCACGGTCTCGCATCAAGAGAGAGGCAGCTTCTCCATTGAAT
GGATCAGATGGGTTTGGATATAGAAGCAGTTGAGGAAGGAATGACTCGAAGACATTGATAAGATCAAACATTGGGCTCCATGTCTG
GTTTATTACATCTAAGCAAACAGCACCCGAAGATTCATCAACATTGGGGTGATAAATCTTGTTAACGAAACCAACAGAAGGAGATT
TGTAAGGATAAGCTTCAGGAAGTTCGACTTTGATCTTCCATACACCTCCCTCATATAGACTGTCAGTGGGGCCATGGAAAGTAACA
TAGAACATCTGCAAATCGTCGTTGACAGTATCCACCTTGTAATCACTCATCATCAATTTCATCATGTCCATCTCTCGGCGTTTGCT
CGGCGAAGCCATGCCCCCCGATGATTCTTCTCCTTTCTAGAATCTGGTTTCAAAGAGAGAGAGAGAGAGAAAAGATTCGAAAATGA
AAATTGTAATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002880213 ATBRM/CHR2 [Arabidopsis lyrata subsp. lyrata]12427e-134
NP_973695 ATP-dependent helicase BRM [Arabidopsis thaliana]12221e-131
NP_182126 ATP-dependent helicase BRM [Arabidopsis thaliana]12221e-131
AAC62900 putative SNF2 subfamily transcriptional activator [Arabidopsis thaliana]12221e-131
XP_002882046 ubiquitin-conjugating enzyme 6 [Arabidopsis lyrata subsp. lyrata]8932e-093

Swiss-Prot top hits (Blast detail)Scoree value
Q6EVK6 ATP-dependent helicase BRM14905e-164
P42750 Ubiquitin-conjugating enzyme E2 68382e-088
P42748 Ubiquitin-conjugating enzyme E2 47451e-077
P16577 Ubiquitin-conjugating enzyme E2-23 kDa7172e-074
P42749 Ubiquitin-conjugating enzyme E2 57136e-074

TrEMBL top hits (Blast detail)Scoree value
A5B1R0 Ubiquitin carrier protein7372e-075
B8BH65 Ubiquitin carrier protein7372e-075
Q337R4 Ubiquitin carrier protein7372e-075
B4FFL4 Ubiquitin carrier protein7353e-075
B9RDU4 Ubiquitin carrier protein7353e-075

Arabidopsis top hits (Blast detail)Scoree value
AT2G46020.2 transcription regulatory protein SNF2, putative14913e-165
AT2G46020.1 transcription regulatory protein SNF2, putative14913e-165
AT2G46030.1 UBC6 (ubiquitin-conjugating enzyme 6); ubiquitin-protein ligase8443e-090
AT5G41340.1 UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase7522e-079
AT1G63800.1 UBC5 (ubiquitin-conjugating enzyme 5); ubiquitin-protein ligase7135e-075

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
115  42%
 
91  8%
 
104  33%
 
121  8%
 
71  8%

Unigene MembersMember information