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Information for unigene UN20605
| FASTA Sequence |
| Unigene ID: UN20605 | Length: 1133 |
SSR | | GGGTTACTCGCCCTTTGCGAACGCTCTAAGCAAGGCTAGGGATAGATAGATATAGAGAGAGAGAGCGAGAGAGAGATAGAGCAGAA
ATCCGTCTCTTGCCCCTAGATCTGACTTCGTTGAAGATCTCAGAACCTGGATCTGCGTCAGGAAGGAAAATGTACCGGGTTTTGGT
TTTGCTGGTGTTTGTTGGTCAGCTTTGCAATGGGTTCTACTTGCCAGGGAGTTATATGCACACATATTCAAACGGAGACTCAATCT
TGGCGAAAGTCAATTCCTTGACGTCTATAGAAACTGAGCTACCTTTCAGTTTCTATAGCCTTCCTTACTGCAAACCACTGGAGGGC
ATCAAGAAAAGTGCTGAGAATCTTGGGGAGCTTCTCATGGGGGATCAGATTGATAACTCTGCCTATAGGTTCCGGATGAACACCAA
CGAGTCTCTCTATCTCTGCACCACCAGTCCTCTGAACGAGCATGAGGTCAAGCTCCCTGAAACAGAGAACCCGCGAGTTTGTACCA
AGTGAATATGATTTCTCGATAACTTTGCCTGCTTTGAGATTCGCCAAGCAAAATGGGGTTACCATCCAGTGGACTGGATACCCCTG
TTGGGTATTCGCCACCCAACAGCAATGATGATTACATCATCAATCACCTCAAGTTTTAAGGGTCTTGGGTCCATCAGTACGAAGGC
AATGTCATGGAGGTCATTGGCACCGGTGAAGAAGGTATGGGTGTCATCTCTGAAGCTGATAAAAAGAAGACCCTGGGGTATGAGAT
AGTTGGATTTGAGGTTGTTCCATGCAGTGTCAAGTATGATGCCGAAAAAATGACCAAACTCCACATGTATGACCCTGTTCCATCAG
TTAACTGTCCCTTGGAGCTTGACAAAGCCCAGATCATAAAAGAACTTGAAAGGATAACCTTCACTTATGAAGTCGAATTTGTTAGA
AGCGAGACAAGATGGCCATCAAGATGGGATGCCTATTTAAAAATGGAAAGTGCTCGTGTCCATTGGTTCTCTATACTGAACTCGCT
TATGGTGATCGTATTTCTCGCCGTATAGTCTTTGTCATATTCCTGAGACAGTGAGAAGGATCTGACAAGTACGAGAACTGGACAAG
AAGCGCAGCACAGAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_193002 endomembrane family protein 70 [Arabidopsis thaliana] | 751 | 2e-077 |
| CAB53758 putative protein [Arabidopsis thaliana] | 740 | 5e-076 |
| XP_002863313 hypothetical protein ARALYDRAFT_497146 [Arabidopsis lyrata subsp. lyrata] | 729 | 9e-075 |
| XP_002524564 Endosomal P24A protein precursor, putative [Ricinus communis] | 654 | 4e-066 |
| XP_002302834 predicted protein [Populus trichocarpa] | 616 | 1e-061 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55FP0 Putative phagocytic receptor 1a | 202 | 5e-015 |
| A5D7E2 Transmembrane 9 superfamily member 4 | 181 | 1e-012 |
| Q4KLL4 Transmembrane 9 superfamily member 4 | 181 | 1e-012 |
| Q92544 Transmembrane 9 superfamily member 4 | 179 | 2e-012 |
| Q8BH24 Transmembrane 9 superfamily member 4 | 179 | 2e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SU21 Putative uncharacterized protein AT4g12650 | 740 | 3e-076 |
| B9SEZ5 Endosomal P24A protein, putative | 654 | 3e-066 |
| B9GTF3 Predicted protein | 616 | 8e-062 |
| B9IAX5 Predicted protein | 604 | 2e-060 |
| A3BUG8 Putative uncharacterized protein | 560 | 2e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G12650.1 LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35160.1); Has 983 Blast hits to 980 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | 751 | 9e-080 |
| AT5G35160.1 LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12650.1); Has 1053 Blast hits to 1004 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 478; Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink). | 333 | 3e-031 |
| AT2G24170.1 endomembrane protein 70, putative | 229 | 3e-019 |
| AT5G25100.1 endomembrane protein 70, putative | 215 | 1e-017 |
| AT5G10840.1 endomembrane protein 70, putative | 214 | 2e-017 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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