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Information for unigene UN20617
| FASTA Sequence |
| Unigene ID: UN20617 | Length: 1628 |
SSR | | TTCTATAAAATTAGGGTTTTCTTTCCGGCAGCCTTCTCTTCTCTCTCTCTTCTCTATTTTCCTCTCTAGCCTTCCAGTTGCATTCT
CACCATGTCGAGGACGACGAGGACTGCTGCTTCAGAGGCTCGTGATTCGATGGACTCTGAGGAAAGAGTAGACCTTGATCCCGAGG
AGACTCTTGAGGAGGAATATGAGTACGAAGAAGTCGAAGAAGAGGAGGAGGTTGAAGAAGAGGTGGAAGTTGAAGTTGAAGTTGAT
GATGACGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAGAAAGCATGATGAGCTTCTAGCTCTTCCTCCTCATGGCTCTGAGGT
TTATCTTGGTGGGATTCCTACTGATTCTACCGAAGGGGACTTGAAGGGTTTTTGTGAGTCCATTGGCGAAGTTACTGAGGTTAGGA
TAATGAGGGAAAAGGAGTCTGGTGATGGAAAGGGGTATGCTTTTGTAACTTTCAGAAACAAGGACTTAGCTTTTGAAGCAATCGAT
CATCTTAATAACACTGAGTTCAAGGGTAAAAGGATAAAATGTTCTACGACCCAAGCCAAGCACCGGCTCTTTCTTGGTAACGTTCC
TAGAAGCTGGACAGAGTCAGACATTAGGAAAACAGCTAGTGGAGTTGGTCCTGGCGTTCAAAATGTCGAACTCCCTAAGGATCCAC
AAAATATTGGCCGGAATCGTGGGTATGCCTTCATAGAGTATTACAACCATGCATGTGCTGAATACTCAAAACAAAAGATGTCAGAT
CCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTTAACTGGGCTGAGTCAAGGAATGGAGGAGGAGGAGGAGACTCTTCGGCTAC
GCAGGTCAAGGCATTGTACATCAAGAACTTGCCTAGATATATAACACAAGAGCGTCTAAAGTCATTATTCGAACATCATGGGAAGA
TCCTGAAAGTGGTCATACCACCAGCTAAACCAGGGAAGGAAGACAGTAGATATGGTTTTGTGCACTATGCGGAGAGGACAAGTGTC
ATGAAAGCTTTGAAAAACACTGAACGATATGAGATTGATGGTCACACGTTGGATTGTACTCTTGCAAAGCCTCAAGCAGATCAAAA
GGCGAATACAACAACATCACAGAACATGCAGAACTCACTATTGCAGCCAAACTATCCTCCTCTTCTTGGTTATGGCATGGCTCCCA
GTCCCTTCTGTGCTCTTGGTGGATTTGGCGCTCCTGCTTACCCACAACCGTTAATGCATGCGGGAGGTCACGCAGCTGGTGGGATG
GCGATGATGCCGATCATGTTACCTGATGGAAGAATCGGCTACGTCTTACAACAGCCTGGACTAGCAGCAATGCCACAACCTCCACC
AAGGCATTCACCACCGTATAGGGGAAGCGGTTCGAGCAGTAGCAGCAGTGGCAGCAAAAGAAGTAGCAGCGACAATGGTAGAGGAC
GAAGCCGTTACAATCCTTATTAGTTGGTTTCATCGTTCTCTTTTCTTTATTTGGAAAAAAAAACATTTCCAGTCAACTCCCCCCCC
AAAACAAAAGTCAGTTTTAATTTTTAAGCATCATGGTTTTTTCCTCTTCTTTCTGTTACATGTGGTTTTGTAATATTATT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876162 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | 2052 | 6e-228 |
| NP_190834 RNA recognition motif-containing protein [Arabidopsis thaliana] | 2015 | 1e-223 |
| CBI28315 unnamed protein product [Vitis vinifera] | 1397 | 5e-152 |
| XP_002530322 nucleolar phosphoprotein, putative [Ricinus communis] | 1385 | 1e-150 |
| XP_002275366 PREDICTED: hypothetical protein [Vitis vinifera] | 1383 | 2e-150 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q75JC9 Uncharacterized protein DDB_G0271670 | 173 | 2e-011 |
| O15417 Trinucleotide repeat-containing gene 18 protein | 160 | 6e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LXJ8 At3g52660 | 2015 | 7e-224 |
| B9SWF3 Nucleolar phosphoprotein, putative | 1385 | 8e-151 |
| B9HC85 Predicted protein | 1383 | 1e-150 |
| B9SCU6 Nucleolar phosphoprotein, putative | 1356 | 2e-147 |
| B9IIU5 Predicted protein (Fragment) | 1327 | 4e-144 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52660.1 RNA recognition motif (RRM)-containing protein | 2088 | 1e-234 |
| AT3G52660.2 RNA recognition motif (RRM)-containing protein | 2088 | 1e-234 |
| AT4G00830.1 RNA recognition motif (RRM)-containing protein | 1111 | 3e-121 |
| AT4G00830.2 RNA recognition motif (RRM)-containing protein | 1111 | 3e-121 |
| AT5G28390.1 RNA recognition motif (RRM)-containing protein | 470 | 6e-047 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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