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Information for unigene UN20631

FASTA Sequence
Unigene ID: UN20631Length: 699  SNP
GGGCTTCTTCATCCTCCACCGGTTAAACTAATCCACTGACGATAGTCAAGGCCGAAACAACATCATCGAAGACTCACCGGAGATCG
CTACGACTCAACACCATGAACCCTGAGAATCATCAGACCACCACCACTCACTCGAAAGTCATCTCACATGTCTTTTTCACCGGTAC
CGCCAAGCAAGGCAGTGCTGGGCCACCCCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCTTACATCTTCAGAGTCTCTCTCC
CTGGCATGGCCAAAAATCAAGATAAGATCAAATGTGAGATTCAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTACCTGAGATT
GCCATTCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACCCCACCTGGTCCATTTTCTATCACGTTTAATCT
CCCTGGACAAGTGGATCCTCGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGTCGTCAAGCTCGGTGTAC
GCATCCCAACGTCATAGCTCGGTTCTTTTTCCATTAACTAAGTTATGCTCGATTGTGTTGTGTAGAAACATGTTCACAGTGTTCCC
TATTTCTTGAAGATGCTCTTGAACTGTGAAAGTAGTTAGATGTGAAACTGGTACTGTTTTGAGCAATTTAATACTCCCCCCCCCCC
ATTTTGACATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_177770 alpha-crystallin domain of heat shock protein-containing protein [Arabidopsis thaliana]6765e-069
XP_002889084 hypothetical protein ARALYDRAFT_476801 [Arabidopsis lyrata subsp. lyrata]6703e-068
XP_002298345 predicted protein [Populus trichocarpa]3737e-034
XP_002510722 conserved hypothetical protein [Ricinus communis]3692e-033
BAF45120 small heat shock protein [Nicotiana tabacum]3567e-032

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9S842 AT1G76440 protein6764e-069
B9GJA0 Predicted protein3735e-034
B9R8S9 Putative uncharacterized protein3691e-033
A2A1W7 Small heat shock protein3565e-032
A2A1W8 Small heat shock protein3475e-031

Arabidopsis top hits (Blast detail)Scoree value
AT1G76440.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).6772e-071
AT1G76440.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).6772e-071
AT1G76440.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).6772e-071
AT1G20870.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).2901e-026
AT1G54850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54840.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2202e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  33%
 
91  17%
 
61  17%
 
72  33%

Unigene MembersMember information