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Information for unigene UN20679
| FASTA Sequence |
| Unigene ID: UN20679 | Length: 1179 |
SSR | | GGGTGTCTAGCTAGCCATGGCCGTCTGTAACTGTTTCCTCCAAGCTCCACCTCTCTCTCGCTTCCTATCACCGGTTTTCTCTCGCC
GCGCTACGAATCTCTTCGCCGGCTATTGTCAGCTCAAATCAACCGTCATGTTCTCCTCCTCCTCCTCCTCCGCCGCGAACCGAACC
GGACCGTTGACATCTCCCGTCAGAGCTGAAGTAAAGCGCGTCTCGCGGAAGGACGATCAAGTAGCTTCTGCTTCTGATCTTCAATT
CGAGACGCCGTTGAAGATCGTCGAGTATCCGGATCCTATCTTACGCGCTAAGTGCAAGAGGATTGGTGTTTTCGACGAGAATCTGA
AGAACTTGGCCGATAATATGTTCGATGTTATGTACAAAACGGATGGCATCGGGCTCTCAGCGCCACAAGTGGGGTTCAATATTCAG
CTCATGGTGTTTAATCCAGCTGGGGAGTCTGGTGAAGGAGAAGAGATCGTTCTTGTGAACCCGAAAATTAATAAATATTCTGATAA
ATTAGTACCGTTTAACGAAGGATGCTTATCTTTCCCTGGGATCTATGCTGATGTTGTTCGACCACAATCTGTCAAGATTGACGCAA
GGGACATTACTGGTGCAAAATTTTCAATCAGTCTATCACGTTTACCTGCAAGAATCTTCCAGCATGAATACGACCACCTTGAGGGA
GTTCTCTTTTTCGACAGAATGACGGATGACGTTCTTGACACCATTCGTGAAGAGTTAGAGGCCTTGGAAAAGAAGTACGAAGAAAA
AACTGGATTGCCAAGCCCTGAAAAAGTACAAGCACGACAAAAAAAGAAAGCAGGAGTTGGTTTTGGCAAACGTCGATGAGACATTC
TCGCTCGATTCTCATTTCATCTTCGAATAGGATATGGGATTTAACAATGGTATGGGAATCAGACGATGACAAGAAACACGTTTGCA
TTTCTCAATCCAGAGGAGCACATCACATTGTGTGATGCAAATCTCCCAAACTGGATGTACGGTTGTAACAGATATCATTTATTTCA
GAATCTTTTTTTGCCAGAGTAATATATTATTCAAGATTGTCTGTTTGCGCTGTTGTATAATGTTAGCCTTTTAGCTTGAGCTTGTG
AACTGCGTATAAAATGTTCTTTACCACTAAGCTCTACCATATCATGGTTTATCTTTGTTAC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_196970 peptide deformylase 1B [Arabidopsis thaliana] | 1186 | 9e-128 |
| XP_002873683 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1183 | 2e-127 |
| AAM62644 Formylmethionine deformylase [Arabidopsis thaliana] | 1181 | 4e-127 |
| AAG33980 peptide deformylase [Arabidopsis thaliana] | 1180 | 5e-127 |
| 3CPM Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure | 902 | 8e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FUZ2 Peptide deformylase 1B, chloroplastic | 1186 | 4e-129 |
| Q9FV54 Peptide deformylase 1B, chloroplastic | 831 | 6e-088 |
| Q5VNN5 Peptide deformylase 1B, chloroplastic | 737 | 5e-077 |
| B1XJP0 Peptide deformylase | 355 | 9e-033 |
| Q7V3K7 Peptide deformylase | 343 | 2e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9S632 Polypeptide deformylase, putative | 893 | 6e-094 |
| B9GI48 Peptide deformylase (Fragment) | 850 | 6e-089 |
| C5XEI7 Putative uncharacterized protein Sb03g029040 | 732 | 3e-075 |
| B8ACB8 Putative uncharacterized protein | 710 | 1e-072 |
| B9EY90 Putative uncharacterized protein | 705 | 4e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G14660.1 PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase | 1208 | 1e-132 |
| AT5G14660.2 PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase | 1208 | 1e-132 |
| AT1G15390.1 PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase | 152 | 3e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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