Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN20702

FASTA Sequence
Unigene ID: UN20702Length: 1342 SSR 
GGTCGAAGAACATCTATCGGGACGACAAGGAGGCGCAATAGAGACAGAACATAACACGCTTTCGCTTTAGCAATAGAAACCCCCAC
TTTCCTCGAAACATCAGAAACAGTTCAGAAGATGAAACGACGAGGAGCCCTTTAATAAGTTCTCATCTTTTGAATCCCGGATCTAA
CCGGTTTCACTTCGTTTGCCCTCTCCTCCGAAATCTCTGGTTCCCTCCCGGATCGGTGATGTACTGAAGCGGGAGAGAGAGAGATG
TTGTGCTGGAAGGGTTCGGCTAGGCGGAAGGAGAAAACCGGTTTGCTTCCGGTTTACCTGAATGTCTACGATCTAACTCCTATGAA
TGCTTATGGTTACTGGCTCGGACTCGGCGTCTTTCATTCTGGTGTTGAAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAGT
CTCCAAGCACAGGCATCTTTGAAGTGGAGCCAAAGAAGTGTCCCGGTTTCACGTTTAGGAAATCGATTCTTGTTGGGAAAACAGAC
ATGGCTGCGAAAGAAGTCAGAGTCTTTATGGAGAAACTAGCTGAAGAGTATCGAGGAAACAAGTACAATCTCATCTCAAGGAACTG
CAACCATTTTTGCAATGAAGTTTGTGTTAAACTTACTCAGAAACCAATCCCTAGATGGGTCAACCGACTCGCTCGCTTAGGGGTTC
TCTGTAACTGTGTGTTACCACCGCGCTTCAACGAGACAAAAGTGAGGCGGGTAGTTAATAAAGGAGAGCTTTCAGAAGAAGAGAGG
AAGAAAAGGAGAAACCGATCTAGATCAGGTCCTTTGCTCTCTACTTCTTCGTCTTCTTCCACACCTGATAGTCATCGTTCGCATAT
GCGAGCAAAATCAATTGGTAACCCTGCTTCTTCTTCTTCTTCTTCTTCTTGTACTTCGGGTTCTAAGAAAAGTAAAAACCAATGTG
CACCACCACCTACTGCACCTAGAGCTCCAGACCAGAAGTCGCCGAGCGTAGGCGTCAAGACTTGATTCTTATCATCATTATTTGAA
CAATTTAATTATTGTCTATGAAAAAAGGACGAAAGAACAGAGGAAAATGCCAAGCAAAGTATCAATCATACATGGGCATGCTCGTG
CTTTGTTCTCAAGTCATTATGGACCTTTTGGGTGTAGATCACTGTTCTTGGTACAATTTACTTATAGAGGAGTGATGTTATGAGAA
TTGTACAAAGAGAAAATGAATTATATATTTGTATGTTTTTATCTCTCATTTCAATACTAAAGTTCCTAAGCACTTTGTCTTTGTGT
TAGTGGTTTTGTATTCCCCAGTGGATGAATGGAATGTTAAAATTGTCTGACG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878832 hypothetical protein ARALYDRAFT_481377 [Arabidopsis lyrata subsp. lyrata]10174e-108
NP_565588 PPPDE putative thiol peptidase-like protein [Arabidopsis thaliana]10022e-106
XP_002869301 predicted protein [Arabidopsis lyrata subsp. lyrata]8185e-085
AAL38722 unknown protein [Arabidopsis thaliana]7891e-081
NP_194926 uncharacterized protein [Arabidopsis thaliana]7828e-081

Swiss-Prot top hits (Blast detail)Scoree value
Q93VG8 UPF0326 protein At4g174865379e-054
Q5ZIV7 PPPDE peptidase domain-containing protein 13164e-028
A3QRX8 PPPDE peptidase domain-containing protein 13121e-027
Q9BSY9 PPPDE peptidase domain-containing protein 13111e-027
Q9D291 PPPDE peptidase domain-containing protein 13111e-027

TrEMBL top hits (Blast detail)Scoree value
O81728 Expressed protein10022e-106
Q8VZ51 Putative uncharacterized protein At4g319807898e-082
O49393 Putative uncharacterized protein AT4g319807825e-081
B9RNY3 Putative uncharacterized protein7181e-073
Q6NQ19 At5g251707002e-071

Arabidopsis top hits (Blast detail)Scoree value
AT2G25190.1 unknown protein10029e-109
AT4G31980.1 unknown protein7823e-083
AT5G25170.1 unknown protein7001e-073
AT1G80690.1 unknown protein6363e-066
AT1G47740.1 unknown protein5521e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  14%
 
82  29%
 
181  14%
 
72  29%
 
211  14%

Unigene MembersMember information