RadishBase

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Information for unigene UN20704

FASTA Sequence

Unigene ID: UN20704	Length: 1250	SSR
GATGGAACACATCAGTTTTTTTATAAAAATAATAATACTCAAACAGTTGCTACTCTCTCTCTCTTAACTTCTTGAAACCCCTTTCT GGATCTCTAAAAAGAAAGAGAGAGTTCTGTATGCTTTAAAATTAAAAGGTTAAAGAAACAACAACAAACAAAAAAAAAAGAAAGAG GAAAAAAAGGTTGACTAATAATATATCATTAAAACGTGAGAACCAAAGTCTGTGGGAGGTGTTTTCATCATCACTGTCTTCCTTTC TTTGCACAGCAAGGGGGGCATTTATACTGCTTGATGCTCTCTGCTTTGGTGGGAGTGATCTTCACGCATTTTCCGTGGTACCAACG CTCACAAACATCGCAGCAAATCCAAAACTCATCTTGGGTGTAGTTGCCTCCACAGATTCCACAGAGAGTGTCTCCATGCTCGTCTT CTTCTTCTTCTTTTTCATCTTCAACTTCATCCTCGTAGCTCCCTTCCATCAGTTTCGGTGTTGTGCTCTTTGGCTGCCCTTCTATT GATCTCTTAGTGCCGTTTCTGGATTTACTTCCGGAATCCGAGCTTGGCTTGTTGTCTTTGATGGGTTTCCTACCAGTCACTACATC GAATAGAGTTGGGAGATCGTTGATCAGACTGAATAACCGCTTCCTGTCGTTGCGATTAAGGCGAGCACCAAAGTAGAAAGAAACAG AGAGCAACCAACAATCACTATGAACAGCAACGAGCGAGAGCCAGTCTTTCCTCTGCATACCGTCTCTAGCGAAATTGATACCGAGC GCAGGCTCAGGTAGCTCCGGAGGAACTTCCTCCGCCGGCAGATTCACTTCCCACGACTCGTTCGGGTGTCCGTACAAACAAAGATT CTCCTTTTCCGGATCGCATTGAGAGTAGAAATCATCAACATCTTTAGTAAGAGCACGAAGAAGAGCGGAGCGGCGAGAGGTGTAAT CCTTGAAGATCTCTTCTACGGTGCGAGGGTTTGAGGAAACGGCCGCCATAGCTCTCTGTACAGAGAGAGAGAGAAACTCGATTTTT TTGTTCTTTTTTTATTAAATGTGCAAAAAACGGTATTAGATCAGTTGCTAGTGGAGGAAGATCGAGGTCGACATCAATTGTTTCTG ATGCGTTCGGACACGGAGAGAGAAAAGAGAGAGTTTGGAAAGAGAGAGAGAGAGAGAGAGAGAGAACTTTCTTATTTTTGGGGAGT TAGGTTGCGTCAGCGAAAAGGTTTGGGTAATTGAAGAAGAAGATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884835 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	1228	1e-132
NP_187729 alfin-like 2 protein [Arabidopsis thaliana]	1213	8e-131
NP_974280 alfin-like 2 protein [Arabidopsis thaliana]	1011	2e-107
ACU19462 unknown [Glycine max]	965	4e-102
XP_001767878 predicted protein [Physcomitrella patens subsp. patens]	924	2e-097

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	854	1e-090
Q9W0T1 Nucleosome-remodeling factor subunit NURF301	143	4e-008
Q12830 Nucleosome-remodeling factor subunit BPTF	139	1e-007
Q9BTC0 Death-inducer obliterator 1	126	4e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9SRM4 At3g11200/F11B9.12	1213	5e-131
Q3EB90 Putative uncharacterized protein At3g11200.2	1011	1e-107
C6TCB0 Putative uncharacterized protein	965	3e-102
A9SNB6 Predicted protein	924	2e-097
A9RZR6 Predicted protein	913	3e-096

Arabidopsis top hits (Blast detail)	Score	e value
AT3G11200.1 AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding	1244	7e-137
AT3G11200.2 AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding	1042	2e-113
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding	857	5e-092
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	856	7e-092
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding	855	9e-092

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	4			67%


11	2			33%

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