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Information for unigene UN20708
| FASTA Sequence |
| Unigene ID: UN20708 | Length: 1642 |
SSR | SNP | GGCTCCGCGTAAGACATGCAACTGCTGGCCAAAATGGTGTTTCATGTGCTGTGGTTCAAGGAAGAACCGTCAAGCAAAGAAGGTGG
CTGCGGATAAGAAGAAGAAGAATAGGGAAGCGTCTAAGCAGATCCACGCTCTAGAGAATATTGAAGAGGGTAGCGTCACTAAAGGA
TCTAATGTAGAACAATCAACGGAGGCAATGCAGTTGAAGTTGGAGAAGAAGTTTGGTCAGTCTCCTGTGTTTGTTGCGTCTGCTCG
TATGCAAAACGGTGGGATGGCTAGAAACGCAAGCCCTGCTTGTCTGCTTAAAGAAGCTATCCAAGTCATTAGTTGTGGATATGAGG
ATAAAACCGAATGGGGAAAAGAGATTGGGTGGATCTACGGTTCTGTTACTGAAGATATTCTCACGGGTTTCAAGATGCATTCTCAT
GGTTGGAGGTCTGTTTACTGCACACCTAAGTTACCTGCTTTCAAAGGATCAGCTCCAATCAATCTTTCGGACCGTCTTCATCAAGT
TCTTAGATGGGCTCTTGGTTCCGTTGAGATTTTCTTGAGTAGGCATTGTCCTATTTGGTATGGTTATGGAGGTGGTTTGAAATGGC
TTGAGAGGTTGTCATACATCAACTCTGTGGTTTACCCTTGGACCTCTCTCCCTCTCATCGTTTACTGTTCTCTCCCTGCCATCTGT
CTTCTCACTGGAAAATTCATTGTTCCTGAGATCAGCAACTATGCGAGTATCCTCTTCATGGCGCTCTTCTCGTCCATTGCTATAAC
GGGTATCCTGGAGATGCAATGGGGCAAAGTTGGGATCGATGATTGGTGGAGAAATGAACAGTTTTGGGTCATAGGAGGTGTCTCTG
CGCATCTCTTTGCTCTCTTCCAAGGTCTTCTCAAGGTTCTTGCTGGTGTGGACACTAACTTCACGGTCACGTCAAAAGCAGCTGAT
GACGGAGAGTTCTCAGACCTTTACCTCTTCAAATGGACTTCACTTCTCATCCCTCCAACGACTCTCCTCATCATAAACATGATTGG
AATCGTGGTCGGAATCTCTGATGCTATAAGCAATGGATACGACTCATGGGGACCGCTTTTCGGAAGATTGTTCTTTGCACTTTGGG
TGGTCATTCATCTTTACCCTTTCCTTAAAGGTTTGCTTGGGAAACAAGATAGAATGCCGACCATTATCATCGTCTGGTCCATCCTC
ATTGCTTCTATTCTTACACTTCTTTGGGTTAGAGTTAATCCGTTTGTGGCGAAAGGTGGTCCTGTTCTTGAGATCTGCGGTTTGGA
CTGCTTGTGAGATCGGTTGGTGAAAAAGGTTTGGTTCCCACGGATCAAGAGATGGTTTATATACCTCCTCTTAAGACTCCTTCACT
GTGTTCATTACATAATGACAAGAAAAGAAAAAAGGGTTTACATTTGTTACTTTTTGCAAGAATGTGTTGTAGATATAGATGAAGAA
GAAGAAGAAAGAAAGAAGCTGTGGTCTAGTATTTGTTTTGTTCTTTGGTCGTGAGAAACAAAGATTTGTTTTCAAATTATTCTTTA
ATTAAATATTTCTGTTCTCTTTGAATATTACATAAGAGGTGTTTCAGTCTGTAATCTTTTTACCTAAAGAACTTTGATTTTATTTT
CATTTAGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002862432 predicted protein [Arabidopsis lyrata subsp. lyrata] | 2261 | 3e-252 |
| ACS68196 cellulose synthase 6.1 catalytic subunit [Brassica napus] | 2252 | 4e-251 |
| NP_201279 cellulose synthase A catalytic subunit 6 [UDP-forming] [Arabidopsis thaliana] | 2244 | 3e-250 |
| XP_002864919 hypothetical protein ARALYDRAFT_496689 [Arabidopsis lyrata subsp. lyrata] | 2237 | 2e-249 |
| ABI34115 cellulose synthase catalytic subunit [Brassica napus] | 2206 | 8e-246 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94JQ6 Cellulose synthase A catalytic subunit 6 [UDP-forming] | 2244 | 1e-251 |
| Q8L778 Cellulose synthase A catalytic subunit 5 [UDP-forming] | 2116 | 9e-237 |
| O48947 Cellulose synthase A catalytic subunit 2 [UDP-forming] | 2034 | 3e-227 |
| Q9SJ22 Probable cellulose synthase A catalytic subunit 9 [UDP-forming] | 1969 | 1e-219 |
| Q6YVM4 Probable cellulose synthase A catalytic subunit 6 [UDP-forming] | 1720 | 7e-191 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0GPY3 Cellulose synthase catalytic subunit | 2206 | 5e-246 |
| B9HGC9 Predicted protein | 2023 | 9e-225 |
| B9HGD0 Predicted protein (Fragment) | 2023 | 9e-225 |
| B9T5I4 Cellulose synthase A catalytic subunit 6 [UDP-forming], putative | 2015 | 8e-224 |
| B9H5M9 Putative uncharacterized protein | 1977 | 2e-219 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G64740.1 CESA6 (CELLULOSE SYNTHASE 6); cellulose synthase/ transferase, transferring glycosyl groups | 2245 | 9e-253 |
| AT5G09870.1 CESA5 (CELLULOSE SYNTHASE 5); cellulose synthase/ transferase, transferring glycosyl groups | 2117 | 6e-238 |
| AT4G39350.1 CESA2 (CELLULOSE SYNTHASE A2); cellulose synthase/ transferase, transferring glycosyl groups | 2034 | 3e-228 |
| AT2G21770.1 CESA9 (CELLULOSE SYNTHASE A9); cellulose synthase/ transferase, transferring glycosyl groups | 1969 | 9e-221 |
| AT5G05170.1 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/ transferase, transferring glycosyl groups | 1570 | 2e-174 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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