Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN20717

FASTA Sequence
Unigene ID: UN20717Length: 1608 SSR 
TTATAGCCTATATATATACAAATCAAGGAGCCTGAAAATCAAATACATGTGTCCAGTGTGTATGAACATAGCCTCAACTTTAGAGT
ACAGTTGTAACACTGAATCCAAAACTGAAAATAAACTGCTAAGGATCTCATCAAAGCTGTGTTTCCCTTCCCTCCCTAGTCCCTAC
TTTCTTCCATTTTCCATTACAGTGTGGAGAGCTGTTGATTTTTCAGTCTCCCCTACTTCCCTTACTATGCGACTTTAAAAAGAGAA
CAACAAACAAACAAAAGGAAATTTGAAAAGTTTTTCTTTCTTCCTTCTGGAAGATCTCTGATACAGAAAGAAATATAGCAACGTTT
GCTTTAGGCTTGAAAATCTTTATTTGAGTTCCATACAGGAGCCGCCGTCTTTTGCACACCACCACCATCTGATAACACTCCGCTTC
CATTTTCAACTGCTATTAGCGGATCCTTCTCGCTTTCTTTCATCTGAGGCAATTGGGTTGATGTTTCACTTGCCTTCTGCTGAGTC
TCAACCGAGCAGAAATAGGAATAAACCACCATTCCAATCACTGCCACCATAATGCCAAGAATGTTGCGCCAGTTGAATGGGTCCTT
CAGCAACACGTATCCAAATGCTCGAACCAGGCATGTTTTCAGATGTCCGAGCACCTGATATGTGACCGGAGACGTTTTCCCAATTA
CCAGAAAAGTGCTGAAGTTTACAGACACTGATATGAGGCAGGATAGGACGATGAAAAACACAACTTGGGAAGTGTACTTGAAAGCA
AACACATTCTGGTTGGTTAGGAGCCCATCTAAAAATGGGCCAGTGACAAAAAGTGTCATTGCTTGATAAGGGCAAGACTGATAAAG
AAGTTGCGTGGATGAAACTTTGAACTTCTTCTGGATGGTATTTGTCATAATTTGAGCAACGCAAGTTGTGATAACAGCCAGGAGCG
ACAAGACAGAACCCAGCATATTAAGCTGAAGATCTGTGACGGTTGCAATTCCAACACCAAGGGGAAGGATGGTTAATGAAAACTGA
ATTTTTCGACTGAACTTTTTCCTGAAGAAAAGGGTCTCCAAGAGAACAGTACAGGGGATGATTGCTAGCTTTGTCATCTGGTAAAA
ACCAACGGAATTAAAGCCCAGGCTGAGGTTCAATAGTCCAATGGATATCCCATTCAGTATGCCAAATCCCATCACAGCTCGTGGAT
CAAAAGGTTTGTGTTCAAACATCTTCATCCATAGCGCCACATGAAGGGAACAAAACGTGACCAACAGATGCCGACTTGTCAACGTA
GTCGCGAAGGTGAAGCCAAGGGTGCTAATAAGCGCCTTGTTACAGATCACGATCGACACAGACGACACAACGGACAAACTAAAAGC
GCCGATTGTTCCTAGCTGGAACTTCTGGCCCTCGCTCATCTTCGCTCTCCTAATTTTTTTTATTTTATCTCTCTCTCTCGCTTCAG
TCACGATCTCATTCGTGCATATAATCTAATAGCAAATGCGAGAGAATCGAAGCTAAAGGAAGCTCAGGTGAGAACGAGAGAGGATT
CAAACTTCGACGGAGGAGAAGAGATTCAGAGATTCCTATTTTTCGCAATCTGACGATTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_172172 nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]17165e-189
XP_002892363 hypothetical protein ARALYDRAFT_470711 [Arabidopsis lyrata subsp. lyrata]17112e-188
NP_001184926 nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]16592e-182
XP_002881111 hypothetical protein ARALYDRAFT_320800 [Arabidopsis lyrata subsp. lyrata]16063e-176
NP_001154542 Nucleotide/sugar transporter family protein [Arabidopsis thaliana]16054e-176

Swiss-Prot top hits (Blast detail)Scoree value
Q8RXL8 Uncharacterized membrane protein At1g0689017162e-190
Q1JQ66 Solute carrier family 35 member E34294e-041
A4IFK2 Solute carrier family 35 member E34098e-039
Q7Z769 Solute carrier family 35 member E33981e-037
Q6PGC7 Solute carrier family 35 member E33864e-036

TrEMBL top hits (Blast detail)Scoree value
Q8GUJ1 At2g3046016053e-176
B9RX14 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative15936e-175
A9PAL1 Putative uncharacterized protein15311e-167
A9PIW7 Putative uncharacterized protein15311e-167
B9INM8 Predicted protein15311e-167

Arabidopsis top hits (Blast detail)Scoree value
AT1G06890.1 transporter-related17171e-191
AT1G06890.2 transporter-related17171e-191
AT2G30460.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 782 Blast hits to 581 proteins in 90 species: Archae - 0; Bacteria - 6; Metazoa - 140; Fungi - 34; Plants - 501; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).16104e-179
AT2G30460.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2).16104e-179
AT2G28315.1 LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 1852 Blast hits to 1847 proteins in 207 species: Archae - 0; Bacteria - 58; Metazoa - 582; Fungi - 250; Plants - 685; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).11256e-123

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  25%
 
101  25%
 
111  25%
 
61  25%

Unigene MembersMember information