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Information for unigene UN20734

FASTA Sequence
Unigene ID: UN20734Length: 802 SSR 
GTGAGGTAACCAGAAAAAAAAAACTCATTGTCAATTTTCTTTTTTCTTTTGTGGGTTTCCTTCTTTAATTGCTTCCTCAGACGAGC
TCTTGATCTGGTTCATTTAGGATCCTGGAGAGGAGGAAACAACAAACAAACAAAAAATCCCAAAAAGAAGAAAGAGAGAGAGAGAA
AACAAAAAAGAATGTCTTTCACAGGAACTACTGACAAATGCAATGCTTGCGATAAGACAGTCTATGTGATGGACATGTTGTCCATT
GAAGGAATGCCTTACCACAAGTCTTGCTTCAAGTGTACCCATTGCAAAGGCACCCTTGTGATGAGCAACTATTCATCCATGGATGG
AGTCTTGTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGCAATTTCAGCAAAAATTTCCAACCAGGAAAAACTGAGA
AGCCGGAGCAGAATAAGACTCCAAGCAAGATATCTTCAATCTTCTGTGGAACACAAGACAAGTGTGCTGCTTGTGAGAAAACTGTT
TACCCTCTTGAAAAGGTGCAAATGGAAGGAGAATGCTTCCACAAGACATGTTTCAAGTGCGCTCACGGTGGCTGCACGCTGACTCA
TTCCTCGTACGCTTCCCTGGATGGCGTTCTCTATTGCCGGCATCACTTTAACCAACTCTTCCTCGAGAAAGGCAACTACGCTCACG
TTCTCCAAGCAGCCAACCACCGTCGCACGGCCTCAGCAACACTCTTCCTCCGGAGATCACTGAAGAGTAGCCGTCGAGCCAAGAGA
GACGACGTTCAGAGTCTGAAACAGAACA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAF78411 Contains similarity to mRNA for transcription factor L2 from Arabidopsis thaliana gb|X91398. It contains LIM domain containing proteins PF|00412. ESTs gb|T13084 and gb|T42925 come from this gene9922e-105
XP_002892043 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]9634e-102
NP_171683 LIM domain-containing protein [Arabidopsis thaliana]9527e-101
XP_002511828 Pollen-specific protein SF3, putative [Ricinus communis]8523e-089
XP_002302574 predicted protein [Populus trichocarpa]8093e-084

Swiss-Prot top hits (Blast detail)Scoree value
P29675 Pollen-specific protein SF35195e-052
Q4U4S6 Xin actin-binding repeat-containing protein 22113e-016
Q8BGB5 LIM domain-containing protein 21971e-014
Q9ERG0 LIM domain and actin-binding protein 11961e-014
Q1LZA7 LIM domain-containing protein 21961e-014

TrEMBL top hits (Blast detail)Scoree value
Q9LQ78 T1N6.19 protein9921e-105
Q1ECF5 AT1G01780 protein9525e-101
B9RDN9 Pollen-specific protein SF3, putative8522e-089
B9GPY8 Predicted protein8092e-084
B9ICB0 Predicted protein8002e-083

Arabidopsis top hits (Blast detail)Scoree value
AT1G01780.1 LIM domain-containing protein9523e-103
AT2G45800.1 LIM domain-containing protein7992e-085
AT3G61230.1 LIM domain-containing protein7849e-084
AT2G39900.1 LIM domain-containing protein6745e-071
AT3G55770.1 LIM domain-containing protein6621e-069

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  33%
 
91  33%
 
111  33%

Unigene MembersMember information