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Information for unigene UN20744
| FASTA Sequence |
| Unigene ID: UN20744 | Length: 1179 |
SSR | | GGGTCTCTCTGTAAAGAGAAAGAGCTTTAGGGGTTCACTTCAGATCTGTCCGTCTACGCTCTTCTCAATTTTCTCCGTCGTCGCAG
TGATGAGTAGGAGATACAGTCCGCCTTATTACAGTCCTCCGAGGAGAGGATACGGTGGTCGTGGCAGAAGCCCTCCTCCTCCTCCG
CGACGTGGATACGGTGGTGGTGGTGGTGGTGGTGGACGTAAGGGATCTAGCCATGGAAGTCTCTTGGTTCGAAACATTCCTCTCGA
TTGCAGACCAGAAGAGCTTCGTGTTCCCTTTGAGAGGTTTGGTCCTGTGAGGGATGTCTATATCCCCAGAGACTATTACTCTGGGG
AACCTCGGGGGTTTGCTTTTGTGGAGTTTGTCGATGCATATGATGCTGGGGAGGCTCAAAGAAGCATGAACAGAAGAGTATTTGGT
GGGAGAGAGATAACAGTGGTTGTTGCTTCAGAGTCCAGGAAAAGACCTGAGGAGATGCGTGTGAAGACTAGGACTCGTAGCAGGGA
ACCTTCTGGCTCTAGAGGTCGTTCTCATGGACGGTCTCGTTCACGTTCAATCTCTAGATCACGCTCTCCCCGTCGTCCATCGGACT
CTAGAAGCAGACGCCGATCAAGGTCTTACTCTCCTGCACCGAGAAGAAGAGGAGCAGACTATTCAGCATCGCCAAGGAGAAGACAA
GAGGAACGTCCACGCTCACCGCTAAGAAGTCCTCCTCGAGGAGAAGGAGATGCAAAATACAGTCGCAGGTCCTATTCCCCTGGCTA
TGAAGGTGCTGCTGCTGCTGGGGACCGAGACACAAATGGAGACAATGAGACTAGAGAGAAACCGGACTATGAACCAGAGGAAAGGC
GTCGTGGTGGAAGAGAGGTTTCAAGGTCTCCATCAGGATCCAGGTCCAGATCTGTGGAAGCGTCTCCAAGATGAAACTTGTGTTGA
AAGAAAGGTTCTCTTTCTCAGAACAAAACTTTGTGCAACTCCCTCTATGGTGTTTCTTTGTTTCTCTAGTAGTGAACTCTCTGTGT
GCTCAAGAAACTCCTTTACTCTGTCTTGTTAAAAAGATTCATCTCGTCATGTGATGATTCTTAAGATCATTCTCAGTTTTTTCTTT
TTTAATATTTGTATGAAGTCTTTCACCCAATTGAGCCCGTCTAGCATATTTTTTTATGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAB75904 putative RNA binding protein [Arabidopsis thaliana] | 1043 | 4e-111 |
| XP_002876304 hypothetical protein ARALYDRAFT_485973 [Arabidopsis lyrata subsp. lyrata] | 985 | 2e-104 |
| NP_567021 SC35-like splicing factor 30 [Arabidopsis thaliana] | 953 | 1e-100 |
| CAC03602 SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] | 944 | 1e-099 |
| CBI31687 unnamed protein product [Vitis vinifera] | 835 | 5e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O75494 Splicing factor, arginine/serine-rich 13A | 294 | 1e-025 |
| Q9R0U0 Splicing factor, arginine/serine-rich 13A | 294 | 1e-025 |
| P30352 Splicing factor, arginine/serine-rich 2 | 288 | 5e-025 |
| Q06A98 Splicing factor, arginine/serine-rich 2 | 286 | 9e-025 |
| Q3MHR5 Splicing factor, arginine/serine-rich 2 | 285 | 1e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M2T3 Putative RNA binding protein | 1043 | 2e-111 |
| Q8L3X8 Putative RNA binding protein | 953 | 7e-101 |
| Q9FYA9 SC35-like splicing factor SCL30, 30 kD | 944 | 7e-100 |
| B9T4I1 Serine/arginine rich splicing factor, putative | 773 | 5e-080 |
| C5Y8K9 Putative uncharacterized protein Sb05g027700 | 762 | 9e-079 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 953 | 4e-103 |
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 464 | 2e-046 |
| AT1G55310.1 SR33; RNA binding / protein binding | 445 | 3e-044 |
| AT1G55310.2 SR33; RNA binding / protein binding | 431 | 1e-042 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 392 | 4e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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