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Information for unigene UN20766

FASTA Sequence
Unigene ID: UN20766Length: 1397  SNP
GGATCCTTCCGTTTCGTGAAGTAAAACAAACCTCTTCACTCTTTATCTCTCACAGCGACAAATCTCTCGAGACTAACTCTGATCCG
ATCAACAATCATTAGATCAAATCGAATTCGAGATCGATCGCATTTGATCAAACTTTTCTCTCTCAATCAATCTGGTCAACCCCCCT
CCGATGTGGTCTTCGCTGATTTAAGAATCCGATTGAAGCAAAAGTCCGAAACTTTACCGAGATGGGTTTCCTCGAATCGGTGAAAT
CGATCAATTGGGAGCACGAATCGTTCCCTACTTACGAGGATTTCGTGTGGTTGCCTCTCTTCGCTGTCTTCTTCCCTTCCATACGC
TTCCTTCTCGACAGATTCGTCTTCGAGAAAGTGGGAAGGTTGTTTATTTACGGAAGGCAGAGTCCGAAAAAGAATAACAAGAAGAC
GAAAATCAGAAAATTCAAAGAATCAGCTTGGAAGTGTATCTACTACCTCTCAGCCGAGGTGCTTGCTTTGTCCGTGACGTACAACG
AGCCTTGGTTTACAGACACTCTCTACTTCTGGGTTGGTCCTGGAGATCAGATCTGGCCTAACCAACAGATGAAGATAAAGTTGAAG
TTTTTATATATGTATACAGCTGGGTTCTACACTTACTCTATATTCGCGTTGATCTTTTGGGAAACAAGACGTTCTGACTTTGGTGT
TTCCATGGGTCATCATATCACTACTGTTATCCTCATCGTCCTCTCCTACATCTGCAGATTCTCTCGTGCTGGCTCTGTTGTTCTTG
CACTCCATGACGCGAGCGATGTGTTCCTTGAAGTTGGGAAGATGTCTAAGTATAGTGGGTTTGAGAGTATAGCAGCCTTTTCGTTT
GTGCTTTTTGCTTTGTCTTGGGTGGTTCTACGTCTCATTTACTATCCTTTCTGGATCCTTTGGAGCACGAGCTATCAGATTATCAT
GACAGTGGACAAGGAGAAGCATCCAATCGAAGGACCGATATACTACTACATGTTCAACACACTCTTGTTTTGCCTGCTTGTGCTTC
ATATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTACAGGATCGAGGCAAGCTTAGCGAAGATGTCAGATCCGAT
TTTGAAAGCGATGATGAACATGAAGATTGATTGCAACTTTGGGGCTTTTATTTCATCATCTTTCTGGGTATTTGCTAAAATTTAAA
AGTGGGAGGGGGAGTATCTTAACCAGAACATACCGGTTTTTGAATTGATCGGATAACTTTGGGAATTGCATTTTTGGATCGGTTTT
TTCAAGATTTTGTTTAGACATTGCTTCACTTGTTTTTTTTTGTTTTCTGTAGTGTTATTTTATGGACATCTTTTGTTGTTTTGGAA
TAACACAATTGCTTTGTATCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABV89617 Lag1 longevity assurance-like 3 [Brassica rapa]15812e-173
NP_001031037 LAG1 longevity assurance homolog 3 [Arabidopsis thaliana]13562e-147
BAH56987 AT1G13580 [Arabidopsis thaliana]13553e-147
XP_002892760 hypothetical protein ARALYDRAFT_471517 [Arabidopsis lyrata subsp. lyrata]13473e-146
XP_002270800 PREDICTED: hypothetical protein [Vitis vinifera]12792e-138

Swiss-Prot top hits (Blast detail)Scoree value
Q9LDF2 LAG1 longevity assurance homolog 113675e-150
Q6NQI8 LAG1 longevity assurance homolog 313561e-148
Q8W4Y5 ASC1-like protein12162e-132
Q6EUN0 ASC1-like protein 111231e-121
Q6YWS8 ASC1-like protein 210404e-112

TrEMBL top hits (Blast detail)Scoree value
A8IXH2 Lag1 longevity assurance-like 315811e-173
C0Z2Q8 AT1G13580 protein13552e-147
C6KE70 LAG1-like protein 112754e-138
A9PHZ0 Putative uncharacterized protein12512e-135
B9HIW5 Predicted protein12503e-135

Arabidopsis top hits (Blast detail)Scoree value
AT3G25540.1 LAG113683e-151
AT1G13580.2 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)13577e-150
AT1G13580.1 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)10153e-110
AT1G26200.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2).9177e-099
AT3G19260.1 LOH2 (LAG ONE HOMOLOGUE 2)6758e-071

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  33%
 
92  33%
 
112  33%

Unigene MembersMember information