RadishBase

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Information for unigene UN20807

FASTA Sequence

Unigene ID: UN20807	Length: 497		SNP
TTTTTTTAAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGCGAAAGCAAACATATGTTATGGGATAAGAGTCACTCC CCTACAGACATGATAGGAAGTTACACAACATTTTAAGTTGATAAATAAGCACTGTCAAAGACACGCTTCATGGATACAAAGCGGGA TTATTTCTTGCCACTCTTCTTAAGACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTTTAAGTGCCTTTT CCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGCTCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCC TTTCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGATGCTGATCTGAGAATTGGGGAAAATTTAAGTTTCA GACGATGGACCTGCTGTGTGTATGCGATAGAATCTCTAGTTGCTCGTTTATTATATTGAGTTCGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_563969 translation machinery associated protein TMA7 [Arabidopsis thaliana]	306	1e-026
ACS96448 unknown protein [Jatropha curcas]	297	1e-025
NP_566533 Translation machinery associated TMA7 [Arabidopsis thaliana]	294	2e-025
XP_002862265 hypothetical protein ARALYDRAFT_920992 [Arabidopsis lyrata subsp. lyrata]	291	5e-025
ABK20919 unknown [Picea sitchensis]	288	1e-024

Swiss-Prot top hits (Blast detail)	Score	e value
Q4SUE2 Coiled-coil domain-containing protein 72	194	9e-015
A1A4Q4 Coiled-coil domain-containing protein 72	192	2e-014
Q9XZS3 Coiled-coil domain-containing protein 72 homolog	192	2e-014
Q9Y2S6 Coiled-coil domain-containing protein 72	192	2e-014
Q8K003 Coiled-coil domain-containing protein 72	192	2e-014

TrEMBL top hits (Blast detail)	Score	e value
Q9XI42 F9L1.21 protein	306	1e-026
D2D964 Putative uncharacterized protein	297	1e-025
Q1EBS5 At3g16040	294	3e-025
A9NJV8 Putative uncharacterized protein	288	1e-024
Q8LCA9 Putative uncharacterized protein	287	2e-024

Arabidopsis top hits (Blast detail)	Score	e value
AT1G15270.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16040.1); Has 263 Blast hits to 263 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Plants - 41; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).	307	8e-029
AT3G16040.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15270.1); Has 264 Blast hits to 264 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Plants - 41; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).	295	2e-027

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	6			32%


9	7			37%


8	3			16%


10	2			11%


11	1			5%

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