RadishBase

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Information for unigene UN20827

FASTA Sequence

Unigene ID: UN20827	Length: 1056		SNP
AGGGGAAATTTCAAACCACCACTCAGATCTTTAGACGAAGAACAAAGGATTCTTGAAATCGAAAGATGACATCATCATCACGGGAA GAGAATGTGTACATGGCGAAACTAGCGGAGCAGGCGGAGCGTTACGAAGAAATGGTGGAGTTCATGGAGAAAGTTGCCAAATCCGT TGACAACCAAGAACTCACCGTCGAAGAGAGGAACCTTCTCTCGGTCGCTTACAAGAACGTGATTGGAGCCAGGAGGGCGTCGTGGA GGATCATCTCTTCCATCGAGCAGAAGGAAGAGAGCAAAGGGAACGAGGATCACGTCGCCGTCATCAAGGACTACAGGGCGAAGATC GAAGCTGAGCTTAGCAAAATCTGCGACGGGATTTTGAATGTCCTCGAGGCTCATCTCATCCCTTCTGCTTCGCCTCCTGAGTCTAA AGTGTTTTACCTCAAGATGAAGGGAGATTATCACAGGTACCTTGCTGAGTTCAAGGCTGGCGACGAGAGGAAAGATGCTGCTGAAA GCACTTTGGTTGCTTACAAGTCTGCTCAGGACATTGCCACTGCTGAGTTGGCTCCCACTCACCCCATCAGGCTTGGTCTTGCACTC AACTTCTCTGTCTTTTACTATGAGATCCTTAACTCCCCTGACCGTGCCTGCAGCCTCGCCAAGCAGGCTTTTGATGAAGCAATTGC TGAGTTGGATACGTTGGGTGAGGAATCATACAAGGACAGTACACTGATCATGCAGCTTCTCAGGGACAATCTCACTCTCTGGACTT CAGACATGACAGACGAAGCAGGAGATGAGATAAAGGAGACATCAAAGCCAGAAGGTGCAGCAGAGTAAGGCTCAAGACTAGGAACT GGTTTTATGAAGGTAGAAACTTCCTAGAAGGTTATGTGATAATTCTGAGTGATATAACTCAGAACTCGTATCAGATACCACTCTTA TTGTTTGTTTTGTTTGTTTGGATACAATTTGAAAACCACTTTGCGAATTTGCGATTGATTCCCTCTAAATTTCCTATTTTTCAGTG AAATCAAATATTTCTTTTTCTGTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACN73536 1433-3 [Brassica napus]	1266	4e-137
XP_002870838 hypothetical protein ARALYDRAFT_494127 [Arabidopsis lyrata subsp. lyrata]	1213	6e-131
NP_568557 14-3-3-like protein GF14 psi [Arabidopsis thaliana]	1205	5e-130
ADO95303 14-3-3-like protein GF14 Psi [Eutrema salsugineum]	1202	1e-129
AAA32799 GF14 psi chain [Arabidopsis thaliana]	1201	1e-129

Swiss-Prot top hits (Blast detail)	Score	e value
P42644 14-3-3-like protein GF14 psi	1205	2e-131
Q96450 14-3-3-like protein A	1149	7e-125
Q9SP07 14-3-3-like protein	1142	4e-124
Q96300 14-3-3-like protein GF14 nu	1131	8e-123
P42645 14-3-3-like protein GF14 upsilon	1127	2e-122

TrEMBL top hits (Blast detail)	Score	e value
C0KJK8 1433-3	1266	3e-137
Q5UFR1 14-3-3 family protein	1164	2e-125
D4P505 14-3-3 family protein	1158	1e-124
B7UD06 14-3-3 protein	1157	1e-124
Q9LKL0 14-3-3 protein	1152	5e-124

Arabidopsis top hits (Blast detail)	Score	e value
AT5G38480.1 GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid binding	1205	2e-132
AT5G38480.2 GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid binding	1176	4e-129
AT3G02520.1 GRF7 (GENERAL REGULATORY FACTOR 7); protein binding / protein phosphorylated amino acid binding	1131	7e-124
AT5G16050.1 GRF5 (GENERAL REGULATORY FACTOR 5); ATP binding / protein binding / protein phosphorylated amino acid binding	1127	2e-123
AT1G35160.1 GF14 PHI (GF14 PROTEIN PHI CHAIN); protein binding / protein phosphorylated amino acid binding	1092	2e-119

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	4			33%


12	4			33%


10	4			33%

Unigene Members	Member information