RadishBase

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Information for unigene UN20843

FASTA Sequence

Unigene ID: UN20843	Length: 1218	SSR
CCTTCTCTCCTCTTCTCTCTTCGATAATTTCGCCTTCCTTCTTCTTCTTTTGATCTCATTGTTTCTTCCTCGCTTCGAGATTCATT TTCAAAGATCTCATCTCTTTCGTGGGATTACACTATAAAAAAAGAGAGAAAAAAACATTGATGCTTAACCAGCAGTTATTTGTCTT TGAGACACATGTCTCCGATTATACTCAGTGAGATCTTCCTCTCTGGGTTTATGCTAAACTCCACAGTTAGGCGCAGGACCCATCTC GTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACTACGTCTCATAGTTTCTGAAACTCTCCAACTTTAATCTTCCATATAT ATTTTATACTCATAACTATATCCAAACCCTAGTTTTCTAAAAATATATATTTTCTTTTGTTTCTTCATCGTATATCTGTCATCAAT ATTGTTCCTGTTCTGTCTTGAAATTTACCCTAAAAAAACATTTTAAAAAATAATAGTATCTCTCTTCTTTCTGGAGGCTTGTTTGT TTGTTTACTGCATGGAATCGTCGTCGTCGGTAACAACTTCGTCGGCGATTCAAACCTCTTCCGGGTCAGAGGAGAATCTCATGGAG CAGAGGAAACGTAAGAGGATGCTCTCAAACCGTGAGTCAGCGAGGAGATCAAGGATGAAGAAACAGAAGCTCCTGGACGATCTAAC GGCTCAGGTAAACCAGCTCAAGAAAGAGAACAGCGAGATCGTGACAAGTGTCAGCATCACCACGCAGCACTACTTGGCTGTTGAAG CAGAGAACTCTGTTCTCAGAGCTCAGCTCGATGAACTCAGCCACCGGCTCCAATCTCTCAACGACATCATCGGTTTCCTCGACAAC ACCAAACGGGGTTTGTCCGAACCCTCTGACCGGTCCAGAGTCTGATGACTTCCTCGTGAATCGGATGGATATGAACATGTTTCATA TGATGAACCAGCCTCTCATGGCATCTTCTGATGCTTTGCTGTATTAGAAATGTGGACCCAAAAAACCTCGAAATTATCTAATGGGG CCGTTTCTTTGTCAGATTTTAAGTTATGTCCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAATAAATGGGTA TGTTGTTTTGATTGTTCTAAGAGTATTTGATTTTCTTGTTGTGCTTTGTTCCGTCTTTGGCGCTAGGTATTAAAAGCATCTTTATG AGTGTGTTTGTAAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAG17475 transcription factor GBF6 [Arabidopsis thaliana]	487	1e-046
NP_195185 G-box binding factor 6 [Arabidopsis thaliana]	487	1e-046
XP_002869136 transcription factor GBF6 [Arabidopsis lyrata subsp. lyrata]	476	2e-045
ABI34667 bZIP transcription factor bZIP125 [Glycine max]	381	2e-034
AAD21199 putative bZIP DNA-binding protein [Capsicum chinense]	373	2e-033

Swiss-Prot top hits (Blast detail)	Score	e value
P24068 Ocs element-binding factor 1	200	9e-015
Q99090 Light-inducible protein CPRF2	147	1e-008
P12959 Regulatory protein opaque-2	141	6e-008
P23922 Transcription factor HBP-1a	134	4e-007

TrEMBL top hits (Blast detail)	Score	e value
O65683 BZIP transcription factor ATB2	487	8e-047
P94060 ATB2	487	8e-047
Q0GPF7 BZIP transcription factor bZIP125	381	1e-034
A9PCZ7 Predicted protein	373	1e-033
Q8GTZ1 BZIP transcription factor	373	1e-033

Arabidopsis top hits (Blast detail)	Score	e value
AT4G34590.1 GBF6 (G-BOX BINDING FACTOR 6); DNA binding / protein heterodimerization/ transcription factor	487	4e-049
AT1G75390.1 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor	330	7e-031
AT2G18160.1 ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2); DNA binding / protein heterodimerization/ transcription factor	301	2e-027
AT1G75390.2 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor	263	4e-023
AT3G62420.1 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53); DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor	228	5e-019

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			75%


12	1			25%

Unigene Members	Member information