 |
Information for unigene UN20844
| FASTA Sequence |
| Unigene ID: UN20844 | Length: 797 |
| SNP | GGATTCTCAAAAGCCATGACTTCTCTCTCCATATCCTTCCTTTTAACTCTCTGCCTCTTCGTAACCCCATCTCTCTCATCAGACTC
TGACCCTTTACAAGACTTCTGCGTCGGCGATCTCAAAGCTTCTCCTTCCCTCAATGGCTTCCCTTGCAAGTCACCAGTCTCCGCTT
CTGACTTCTTCTTTTCCGGCTTAAGCATTCCTCTAAACACCTCAAACCGTAACGGCGTAGCCGTGGCCCCCGCCAACGTCCTGACC
TTTCCGGGTCTAAACACTTTAGGACTCTCGATGAACAACGTCGAGTTCGCTCCAGGCGGTGTGAACCCTCCTCACTCGCACCCTCG
TGCAACCGAAGCAGGAGTTGTGATCGAAGGCTCTGTTTTCGTCGGGTTCTTGACCACGAACAACACTTTGTTCTCGAAGGTTATAC
ATGCCGGAGAAATGTTTGTTGTCCCTAGAGGGTTGGTTCATTTCCAGTGGAACGTTGGTAAAGGGAAAGCACGTTTGGTAACTTCC
TTTAACAGCCAGCTTCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGTTCTATGCCTGAGATTCCAAACGCGGTTTTGACCAA
AACGTTTAGGACTGATGATGTAACTGTGAACAATCTCAAGTCCAAGTTTGCTGTTTGAATTTTTATTTATTTTATGTTTTCTACTA
ATATGATATTTCTCAATTCTATTTTATTGCAGTAATGGTGTACATTTATGTGTAATAATAGTTATGAAAAATATATCTTGACCAAA
AGTTATAAAGCACAATTAACATT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002893025 hypothetical protein ARALYDRAFT_472121 [Arabidopsis lyrata subsp. lyrata] | 991 | 2e-105 |
| NP_173332 germin-like protein subfamily T member 2 [Arabidopsis thaliana] | 988 | 4e-105 |
| XP_002893024 hypothetical protein ARALYDRAFT_889326 [Arabidopsis lyrata subsp. lyrata] | 923 | 2e-097 |
| NP_564067 germin-like protein subfamily T member 1 [Arabidopsis thaliana] | 920 | 3e-097 |
| AAB51565 germin-like protein [Arabidopsis thaliana] | 902 | 4e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LMC9 Germin-like protein subfamily T member 2 | 988 | 2e-106 |
| P92995 Germin-like protein subfamily T member 1 | 920 | 2e-098 |
| Q9S772 Germin-like protein subfamily T member 3 | 633 | 3e-065 |
| Q7F731 Germin-like protein 1-1 | 570 | 6e-058 |
| Q6I544 Germin-like protein 5-1 | 555 | 3e-056 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q29PR5 At1g18980 | 988 | 3e-105 |
| B9R911 Rhicadhesin receptor, putative | 660 | 3e-067 |
| B9IEI8 Predicted protein | 654 | 2e-066 |
| A0MEG4 Putative uncharacterized protein (Fragment) | 633 | 5e-064 |
| Q8H2A6 Germin-like protein | 623 | 7e-063 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G18980.1 germin-like protein, putative | 989 | 1e-107 |
| AT1G18970.1 GLP4 (GERMIN-LIKE PROTEIN 4); manganese ion binding / nutrient reservoir | 921 | 1e-099 |
| AT1G74820.1 cupin family protein | 634 | 2e-066 |
| AT1G09560.1 GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir | 540 | 2e-055 |
| AT1G02335.1 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir | 537 | 4e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
