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Information for unigene UN20871
| FASTA Sequence |
| Unigene ID: UN20871 | Length: 1315 |
SSR | | GGATAAATCTTGTGAAAAGAGAAGGATAAAAATATGGTGAACAAAACCTCTGTCGAATTCGATTCTTATATCGAACGAAAGGCTTT
CGATGAGACGCAAGAAGGAGTAAAAGGACTTGTCGACGCTAAAATCACCGAAGTCCCACGCATCTTCCACGTCCCAAAAGATACCT
TGATCAACGAGAAACCCTCTGTTTCAGACCTAGGGATCCCTATCATCGACTTTGCAAGCGTCCACGTGGACACAGCCTCACGTGAA
ACCGTCGTGGAGAAGGTAAAACACGCGGCGAAGAAGTGGGGATTCTTCCAGGTGATCAATCATGGTATTCCTTTGAACGTTCTTAA
AGAGATTGAAGATGGAGTTCGTAGGTTTCATGAGGAAGATCCTGAGGTCAAGAAACGATACTTCTCGCGCGATTTCAGCGCTAACA
AATTTGTCTACAATAGTAACTTCGATCTATACAGTGCTTCTCCTTCTGTTAATTGGAGAGATGCTTTCTCTTGTTACATGGCTCCA
GATCCTCCACCTCCTGAGGATCTCCCAGTGGCTTGCAGGGATGCTATGATCGAATACACAAAGCATGTGATGAGTTTAGGTGATTT
GCTATTTGAGCTTCTTTCAGAAGCACTAGGTTTGAAATCTGAAACCTTGAAGAACATGGATTGCTTGAAGAGTTTGCTTATGATAT
GCAATTATTACCCACCTTGTCCACAACCTGACTTAACTATGGGGATAAGTCAGCACTCTGACAACTCTTTCCTCACGATTCTTCTT
CAAGACAACATCGGCGGTCTTCAGATTCTTCATCAAGATTCTTGGGTCGATGTCTCTCCTATCCCCGGAGCTCTTGTCATCAACAT
GGGAGATTTCTTGCAGTTGATAACGAACGATAAATTTGTGAGTGCCAACCATAGAGTGCCCGCGAACAGAAAAGGGCCAAGGGTTT
CAATAGCGAGCTTTTTCAGCTCAAGTGCACTCCCTAATGCGACAGTTTATGGACCCATGAAAGAGCTTGTGTCTGAGGAAAACCCT
CCAAAATACAGAGACATAACCATAAAAGAATACACCGAAGGATATTTTGTGAAAGGTCTAGATGGAACATCCCATCTGTCGAATAT
TAGGATATGAATTAAGCGCATGATCAGCTACTCTGTTCTTGGCTATGCAGTAGCTAACCTAATGTATCAAAAATAAGAAAGCATAG
CCTATGTGTGTGTGTGTGTATTAGTGTATGTGTTGAGCTACTCTGTTTGGATCTTTCTAATTTAGCCAGACGTACCAGACCATAAG
AGTACCCTTATTGGTAGAACTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200761 putative 2-oxoglutarate-dependent dioxygenase [Arabidopsis thaliana] | 1582 | 1e-173 |
| XP_002866335 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1576 | 7e-173 |
| XP_002866336 oxidoreductase [Arabidopsis lyrata subsp. lyrata] | 1574 | 1e-172 |
| NP_200762 oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] | 1571 | 2e-172 |
| NP_171930 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] | 1397 | 4e-152 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q84MB3 1-aminocyclopropane-1-carboxylate oxidase homolog 1 | 1181 | 2e-128 |
| Q9C5K7 1-aminocyclopropane-1-carboxylate oxidase homolog 2 | 1085 | 2e-117 |
| Q8H1S4 1-aminocyclopropane-1-carboxylate oxidase homolog 4 | 1077 | 2e-116 |
| Q9SKK4 Probable 2-oxoacid dependent dioxygenase | 986 | 7e-106 |
| P10967 1-aminocyclopropane-1-carboxylate oxidase homolog | 962 | 4e-103 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LTH8 1-aminocyclopropane-1-carboxylate oxidase-like protein | 1582 | 9e-174 |
| Q9LTH7 1-aminocyclopropane-1-carboxylate oxidase-like protein | 1571 | 2e-172 |
| P93824 F19P19.22 protein | 1397 | 3e-152 |
| Q9LSW7 1-aminocyclopropane-1-carboxylate oxidase | 1266 | 4e-137 |
| P93821 F19P19.18 protein | 1251 | 2e-135 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G59530.1 2-oxoglutarate-dependent dioxygenase, putative | 1583 | 4e-176 |
| AT5G59540.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1572 | 7e-175 |
| AT1G04350.1 2-oxoglutarate-dependent dioxygenase, putative | 1398 | 1e-154 |
| AT5G43440.1 2-oxoglutarate-dependent dioxygenase, putative | 1267 | 2e-139 |
| AT1G04380.1 2-oxoglutarate-dependent dioxygenase, putative | 1252 | 9e-138 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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