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Information for unigene UN20874

FASTA Sequence
Unigene ID: UN20874Length: 1307 SSR 
GGATCGATCATTTCATTAGAAGCAAAAGCTCATTTTTCATTTTGCCATGTCGACGACTTTCGAAGACGGAGACTTCCCGGCGGCGG
CGGCTCAGACCCATTCTCCGACCGAACACGACGATTCATTCATGAGCTACGAAAACTTCTCCTCCGAAGCCCCCCCGCCATCTGGT
GGTGGCTTCTCCTCCTTCAACGGTGACGGATCTGAAAACCCCGCTTCTCCCAACAACGGCTACGGATTCGCCGCCGCTGCTGATTC
CTCCCCAAACGGAAACGGCGACGCGATCTTCTCCTCCGACGGGCCCACTCTTCCAGATCCGAACGAGATGCGGGAAGAGGGTTTCC
AACGCCGTGAGTGGCGCCGTCAAAACGCACTTCACCTCGAGGAGAAGGAAAAGAAAGAGAAGGAAATGCGGAATCAGATCATAGCT
GAAGCTGAAGAGTACAAGAAGGCTTTCTATGGGAAGAGAGAGAAGACCATCGAGACCAACAAGGCTGATAACCGCGAACGCGAGAA
GCTATATTGGGTGAACCAAGAGAAGTTCCACAAAGAAGTTGACAAGCACTACTGGAAATCGATCGCGGAGCTGATCCCGCGTGAGG
TTCCCAACATTGAGAAGAAGAGAGGCAAAAAGGATCCCGACAAGAAACCTTCAGTGAATGTTATCCAGGGTCCTAAACCGGGGAAG
CCTACTGATCTAGGGAGAATGAGGCAGATATTCTTGAAGCTCAAGACTAATCCACCACCCCACATGATGCCTCCTCCTCCTCCAGC
CAAGGACGCGAAAGATGCCAAAGATGGTAAAGATGCAAAAGGTGAGAAGAAGGACGCCAAAGATGGAAAACCCGCCGCAGAGGCAA
AGGCGGCAGAGGAAAAACCTGCATCACCTGCCAAGGACGCAAGTGCTGAAACAACAGCGAAACCTGAGGCTGCCACTGCTGCTGCT
GCTGCTGCTTCTGGCTCGGGAGAGGGGGAAAAGCCTGTGGCTGAGGCTGAAGGAGCCAAGGCAGAGTGAAAGAAAAGGGTGTGTTA
GCATTACTGTTGGAGGGGGGGTTGGGGGGATAAATTGGTATTGGAGTTACAGTAGCTGCGGGGCAAAATAAGAAGAGGTTAACATG
TGCACATAGAAGCTCTATTGGGGGATCTTTATGGCACACCATTTCTTTTTCTGGAGAGAGAAAGAGATAATCTTAGTCCTTCCTTT
TGGTTTTCTATTTTTATTCATTATTTCTTCTGTTGTGCAAAATTTGGTGATGAGGATATTGTCTGGGATTATTCATTTTACTTCCA
CGTTATTACATTTTTAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002886302 hypothetical protein ARALYDRAFT_900444 [Arabidopsis lyrata subsp. lyrata]12641e-136
AAM61043 unknown [Arabidopsis thaliana]12012e-129
NP_565484 Clathrin light chain protein [Arabidopsis thaliana]12012e-129
XP_002517940 conserved hypothetical protein [Ricinus communis]8428e-088
XP_002329414 predicted protein [Populus trichocarpa]8411e-087

Swiss-Prot top hits (Blast detail)Scoree value
Q869E1 DNA ligase 11382e-007

TrEMBL top hits (Blast detail)Scoree value
Q8LG44 Putative uncharacterized protein12011e-129
Q9SKU1 At2g2076012011e-129
B9RW21 Putative uncharacterized protein8426e-088
B9N2B6 Predicted protein8418e-088
A9PEB0 Putative uncharacterized protein7825e-081

Arabidopsis top hits (Blast detail)Scoree value
AT2G20760.1 protein binding / structural molecule12026e-132
AT2G40060.1 protein binding / structural molecule6004e-062
AT3G51890.1 protein binding / structural molecule4902e-049

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  20%
 
61  20%
 
103  60%

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