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Information for unigene UN20886

FASTA Sequence
Unigene ID: UN20886Length: 1610 SSR 
GAAGAGGGGACTGATATCGTTTGCACGAGCCTCCTCAATGTCAGACGCTCCAGATGTTGATGACCGTGTTGATTACGAGGATGGTA
GCTCCAGTGAGATGGAGGAGGAACATGTAGAAGAAGATGATGATGACAGTCAAAATGACGAAGAGCATGATGTGGAAGGTTATGGT
GGTAGAAAAAGTGAAGAAGCTGAAGCTGAAGATGAAGACAACAATATTGATATTGATATTGAGACAGCAGAAGATGAAGAAGAAGA
AGAAGAAAGGGAAGAGTATTCCCATCTTCTTTCACTTCCTCCTCACGGTTCTGAAGTTTTCATTGGCGGCCTCCCTAGGGATGTTG
GAGAAGAAGACCTAAGGGATCTATGTGAACCAATTGGCGATATTTTTGAGGTGAGATTGATGAAAGATAGAGACTCTGGTGAGAGC
AAAGGGTATGCTTTTGTAGGTTTCAAAACCAAAGACGTTGCGCAAAAGGCAATTGAGGAGTTGCACAGTAAACAGTTTAAGGGAAA
AACAATAAGATGCTCCCTTTCTGAAACCAAGAATAGACTATTTATTGGTAACATCCCAAAGGACTGGACTGAGGATGAGTTTAGGA
AAGTCATAGAGGATGTTGGTCCTGGAGTGGAGAGCATCGAGCTCATAAAAGATCCAACAAACTCTGCTCGTAACCGTGGTTTTGCA
TTTGTTCTATACTATAACAACGCATGTGCTGATTATTCAAGGCAGAAAATGATAGATTCTAGTTTTAAGCTTGAGGGCAACGCTCC
AACTGTGACTTGGGCTGACCCAAAAAGCTCTCCTGAGACTTCAGCTGCTGCTGCCCAGGTGAAAGCTCTTTATGTGAAGAATATTC
CAGAGAATACATCAACAGAGCAACTGAAGGAACTCTTTCAGAGACATGGAGGAGTTACTAAAGTCGTCACACCTCCTGGAAAAGGT
GGTAAACGTGATTTTGGGTTTGTACACTATGCTGAAAGGTCTAGTGCATTGAGGGCTGTCAAAGACTCCGAGAGATATGAAATCAA
CGGTCAAGAGTTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAGAGGAAACATGAGCCTTCTTTTTATGCTTATGGTGCTGCTGCAC
CTACTCCTTCTCCCTTTGCGCTTCCTACGTTTGGTGGTTTTGCTGCGCCTCCTTATGGTGCTATGGGTATTGCCGGTAGCTTTGTT
CAGCCAATGATATATGGTAGAGGAGCAATGCCAACAGGGATGCAAATGGTTCCAATGCTTCTTCCTGATGGCCGAGTTGGCTATGT
TCTGCAACAGCCTGGAATGCAGATGGCACCACCCGCACGACCCAGAAGAGATGACCGGAATAACGGAGGGTCAGGGAGAGAGAACA
GGCATGATGATCATGATGGCAACCGAGGAGGCAGAAGGTACCGTCCCTACTAGCAGCAGCCCAAAGCTATAATAGAGAAACAAGAA
GCAAGTAGACAAAGGAAAGGTGTACTGGAATTTGTTTGTAGTTTGAGAACTTTATGTAAGAAAAAGCTCTCTCTAATGTGAAATCG
AGACCTTACGGTTTCTTCTTGTTTGGTAAGAAGATTGATGAAGGGTGGTTCAGTTCTTACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875012 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]19593e-217
NP_567192 RNA recognition motif-containing protein [Arabidopsis thaliana]19541e-216
NP_001190647 RNA recognition motif-containing protein [Arabidopsis thaliana]19021e-210
NP_001190648 RNA recognition motif-containing protein [Arabidopsis thaliana]18932e-209
AAB62861 similar to nucleolin protein [Arabidopsis thaliana]18823e-208

Swiss-Prot top hits (Blast detail)Scoree value
O43390 Heterogeneous nuclear ribonucleoprotein R4464e-043
O60506 Heterogeneous nuclear ribonucleoprotein Q4411e-042
Q7TMK9 Heterogeneous nuclear ribonucleoprotein Q4402e-042
Q7TP47 Heterogeneous nuclear ribonucleoprotein Q4402e-042
Q8TBY0 Probable RNA-binding protein 464034e-038

TrEMBL top hits (Blast detail)Scoree value
Q9ASP6 AT4g00830/A_TM018A10_1419549e-217
O23093 A_TM018A10.14 protein18822e-208
B9I936 Predicted protein15533e-170
C6TNJ7 Putative uncharacterized protein (Fragment)14101e-153
Q53JL6 Putative uncharacterized protein12191e-131

Arabidopsis top hits (Blast detail)Scoree value
AT4G00830.1 RNA recognition motif (RRM)-containing protein19554e-219
AT4G00830.2 RNA recognition motif (RRM)-containing protein19554e-219
AT3G52660.1 RNA recognition motif (RRM)-containing protein10872e-118
AT3G52660.2 RNA recognition motif (RRM)-containing protein10872e-118
AT2G44710.1 RNA recognition motif (RRM)-containing protein3263e-030

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  33%
 
122  67%

Unigene MembersMember information