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Information for unigene UN20888
| FASTA Sequence |
| Unigene ID: UN20888 | Length: 1035 |
| SNP | CCGTAAGACAAAAATCAAAAGGATGAGGGGATTGGTGAACAAGCTCGTGTCCAGATCCCTCTCCGTCTCCGGCAAATGGCAGCACC
AGCAGCTTCGCCGTCTCAACATCCACGAGTACCAGGGAGCAGAGCTGATGGGTAAATACGGAGTAAACGTGCCCAATGGAGTCGCT
GTTTCTTCTCTCGATGAAGTTAAAAACGCTATCGAACAAGTGAAGAAGCTTTACGAACTCTTCCGCAAGAGTGACTGCACAATGTT
GGAAATCAACCCTCTCGCTGAGACATCCACGAACCAATTGGTAGCTGCTGATGCTAAGTTGAACTTTGATGATAATGCTGCTTTCC
GTCAGAAAGAAATTTTTGCCCTTCGTGATCCAACACAGGAGGATCCACGAGAGGTGGCTGCTGCAAAAGTGGACCTGAACTATATC
GGTTTAGATGGAGAGATTGGGTGCATGGTGAATGGTGCGGGATTGGCCATGGCAACCATGGACATCATTAAACTGCACGGTGGGAC
TCCTGCAAATTTCCTTGACGTTGGTGGAAACGCTTCTGAACACCAGGTGGTGGAGGCGTTTAAGATACTGACATCGGACGATAAAG
TGAAAGCAATATTGGTGAACATATTCGGTGGGATAATGAAATGTGATGTGATTGCTAGTGGAATTGTGAATGCTGCTAAAGAGGTG
TCACTGAAAGTACCAGTGGTGGTTCGTCTGGAAGGAACAAATGTTGAACAAGGAAAGAGAATCCTCAAGGAAAGTGGAATGAAACT
CATAACAGCTGATGATTTGGATGACGCAGCAGAGAAAGCTGTGAAGGCATTAGCTAATTAGGCTATAAGGGGTTGTTTTCATACAA
GAAAAAAAGCTATTTGTTGAGATTGTTTTTTTCTATGGTTTTAGGCCATTTCTATGTGGTTGAGGCAATTGCATATTGTTGCCGAT
ATAATATGCTGAAACAGATCAATAATGTTATTGATGAAATTTTAATTTTTCATCAAAAAATTGTTCTTAAATGCACCGCTTCTGAA
GCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884202 hypothetical protein ARALYDRAFT_480870 [Arabidopsis lyrata subsp. lyrata] | 1054 | 2e-112 |
| NP_179632 Succinyl-CoA ligase [GDP-forming] subunit beta [Arabidopsis thaliana] | 1045 | 2e-111 |
| AAM65138 succinyl-CoA ligase beta subunit [Arabidopsis thaliana] | 1039 | 9e-111 |
| BAD95156 succinyl-CoA ligase beta subunit [Arabidopsis thaliana] | 1032 | 6e-110 |
| XP_002301863 predicted protein [Populus trichocarpa] | 980 | 6e-104 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O82662 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial | 1045 | 8e-113 |
| Q6K9N6 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial | 964 | 2e-103 |
| Q869S7 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial | 768 | 1e-080 |
| Q55AI5 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial | 758 | 1e-079 |
| A1AZH7 Succinyl-CoA ligase [ADP-forming] subunit beta | 719 | 5e-075 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAV0 Succinyl-CoA ligase beta subunit | 1039 | 6e-111 |
| Q56Z20 AT2G20420 protein (Fragment) | 1032 | 4e-110 |
| B9GRX6 Predicted protein | 980 | 4e-104 |
| B6TS21 Putative uncharacterized protein | 972 | 3e-103 |
| A2X7C5 Putative uncharacterized protein | 964 | 3e-102 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G20420.1 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative | 1046 | 5e-114 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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