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Information for unigene UN20904

FASTA Sequence
Unigene ID: UN20904Length: 1993 SSR 
GGGGCTTTTATGCTAAATGGTAATGTAGACATACAAGCAACCCTATCCTTTGGCTATGCAAGCAAGCACCTACACTTCCTCTTTGT
CTCTACCAAAAGTAAAGCTGGTCCAGACTCGAAACAAAAACAACAACAAAATATTACATCCACAGTTTTTTAACTTATTCATTTGC
CAGAAATGACTGACTACTAGGCATCAGGCAACAGTTCTTGTGATTTAAATGGTAGGCTAGAGAAAGAAAGAGAGTCTCGGTATGTG
CCATGTGATCAGTAAAGGAGTTTAGGCTTTCATCTCCTCAGCAACAGCAGAACCTCCTGCTTTCTCCTTCTCTGCATCATCTCCTT
TCTTCTTCTCCTCAGCAACAGCAGACCCTCCTGCTTTCTCCTTCTCGACATCATCTCCTTTCTTCTCCTCCTCAGCAACAGAAGAC
CCTCCTGCTTCCTCCTTCTCTGCATCATCTCCCTTCTTCTCCTCCTCAGTACCAGCAGCCACTCCTGCTTTTTCCTTCTCTGCATC
ATCTTCTTTCTTCTCCTCCTCCTTAGCACCGGCAGAACCTCCTGCTTTCTCCTTCTCTGCATCATCTTCTTTCTTCTCCTCCTCCT
CTTCTTCTTGTTCATCAACTTCTTCTGCTAATTTGGTGAGCTCACTTTGGATCATCAGCTTTATAAAGGACTTTCTTGGGGTGAGA
TCTTCTTTGAACTCCTTAGCAAGTTCTTTGAGGATGTCCGTGAATGTAGCCGTATTAAAATCCACCCTTTTCAAAATCTCAACAAT
TGCTTTTTTGAGCACTTTATCGCTTGGCCCTTTGGTTTTCTCTTTCCCTTTTCCAGCACTTTTTACTTCTGGCTTCTCTTTTGAAG
CAGAAGACTTTGAAGGGGCCGAGGCCTTGGTAACTTTTTCAGACTTCTTCCTCTTAGAAGATGCCTTTGGACTTGCATCACTGTCA
TCGTCAGTCTTCTTTCGTTTTGCTGATGATCGCTTCTGTGTAACTTTCTCAGGTGGGCTGGATTTTGCAGCAACTGCCGCTTTCTT
GGTTCTGGCTCTCCCTGCTGATTCTTTCTTCCCAGCTGACACTTTCGAACCACGCTTCTTCTTCTTCTTTGGCGTTTCTTCCTCAG
AATCCTCCTCAGGCTCATCTTTCTCCTCGCTTTCAGACGGCTGAGGTGCCTCATCCTCGGATTTGTCAGGAATACCATTTTCGTTC
TCCTTTTCCTCATCTGCATTCTCCTCTTTCTCTTCTTCCTCTTTCCCCTCTTCAGACTCATCTTCAGAATCAGCTAAAATCTTTTT
GGCAGCCTTTGTTCCTTCTCCAGACTTCGTTTGCTCTTGGCCGATCGTTTGGAGGATGAACTCGCAGCTGCAGACGAGCTTTGCTT
GGGAGTTCTCTTGCGCTTTGCTCCAGTACTTGACTTATCTTTCTCATTAGCCGGAACGTCACCTTTCCCATGAGGTTTCTCCAAAA
ACTCAATCAGTTTTGTAATAATATCTTCCTTCTTTGTTGTAGCCTTGGAAACATGAATATCAAACACATCGCAAAACTCCCACAGT
TTCTCTTTGTTACATTTATCAAGCTTTTCTTTTATCTTCTCTCTTGCCTTTTCCTCTTTTCCATGCCAAACAAAGCCTGAGAAGCC
CAATATGTTTGTCTTGATCTGAGCAGCCTTCCCTCTCCTCGCAAATAGAATTTGGTGTAGCACCTTCAGAATTTCATCCGACTTCT
TCCTATTTACCTTGTATGCAACGCTGGGAATATCTTTGAAATATACACCTTGCCCATTTTCAATATGGAACTCCTTGGAAGAGTCT
TTATCAATCACTGCGACAAGCCTCTCAACAGATTTACGCTCACGCACAGGGCGGTCAGAGAAAGGAGTCTTCGGTTCTGCATCCTT
TTTCTCTGCCTCACTTTTTGTCTTCACGTGAGCCTTTCCCTTCCCACGTTTCTTAGAAACCTTGATCTCTTCTTTCTCATCTTCCT
TGTCATCGCCGCTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867554 hypothetical protein ARALYDRAFT_492144 [Arabidopsis lyrata subsp. lyrata]9253e-097
AAM13123 putative protein [Arabidopsis thaliana]8922e-093
NP_194393 DEK domain-containing chromatin associated protein [Arabidopsis thaliana]8922e-093
BAH19494 AT4G26630 [Arabidopsis thaliana]8322e-086
XP_002864406 hypothetical protein ARALYDRAFT_495653 [Arabidopsis lyrata subsp. lyrata]8162e-084

Swiss-Prot top hits (Blast detail)Scoree value
Q75JC9 Uncharacterized protein DDB_G02716701859e-013
Q5UQ57 Probable ubiquitin-conjugating enzyme E2 L7091822e-012
P54696 Myosin-H heavy chain1732e-011
Q01042 Immediate-early protein1714e-011
Q7M732 Retrotransposon-like protein 11624e-010

TrEMBL top hits (Blast detail)Scoree value
Q8RWF6 At4g266308922e-093
Q9SUA1 Putative uncharacterized protein AT4g266308922e-093
B9DFH7 AT4G26630 protein (Fragment)8374e-087
B9DFC8 AT5G55660 protein (Fragment)7845e-081
Q9FM72 Genomic DNA, chromosome 5, P1 clone:MDF207845e-081

Arabidopsis top hits (Blast detail)Scoree value
AT4G26630.1 EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species: Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source: NCBI BLink).9375e-101
AT4G26630.2 EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species: Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source: NCBI BLink).9375e-101
AT5G55660.1 LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species: Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source: NCBI BLink).7843e-083
AT5G63550.1 EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48710.1); Has 115795 Blast hits to 50006 proteins in 1760 species: Archae - 230; Bacteria - 10317; Metazoa - 57515; Fungi - 12631; Plants - 4292; Viruses - 1075; Other Eukaryotes - 29735 (source: NCBI BLink).4277e-042
AT5G63550.2 EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48710.1).4277e-042

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  50%
 
91  25%
 
121  25%

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