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Information for unigene UN20914
| FASTA Sequence |
| Unigene ID: UN20914 | Length: 1206 |
SSR | | GGAACAGATCAATCTTCTCTCTCTCTCTCTCTCTCTCTTTCACTGAACAGTCTCACAAGAGCAAAGTGAAAGACCGTTGCTTGATT
AATGTCACCCTCTTCTTCTTCATCGTCCTCGTCTTCTCAGAAGACATGGATTGTACACGAAATCTTAGCCGGAACAGCGATCGCAG
CAGCGATTGGCGCACGTGCCTATCTGGGTGGATCCAGGGAATTCCGGAGCCGGGTCGTCGGAATCATCCCCGCCCGTTGCGCTTCC
TCTCGATTCGAGGGAAAGCCTCTCGTGAAAATCCTCGGCAAACCCGTGATCCAGAGAACTTGGGAGAGATCGAAGTTAGCTTCTAC
GCTTGATCACGTTGTTGTAGCAACGGATGATGAAAGGATTGCGGATTGCTGTCGCGGGTTTGGTGCTGATGTCATCATGACTTCAG
AGTCTTGCAGAAACGGTACTGAGCGGTGCAGTGAAGCGCTAGAAAAGCTGGAGAAGAAGTATGATGTGGTTGTCAACATTCAAGGA
GATGAACCACTCATTGAGCCTGAGATTATAGACGGTGTTGTCAAAGCACTTCAGAGAGCACCTGATGCAGTGTTTAGCACAGCCGT
GACTTCATTGAAACCAGAAGACGGACTTGATCCTAACCGAGTCAAATGCGTGGTGGACAACCGTGGCTACGCTATCTATTTTTCCC
GGGGTTTGATTCCTTATAACAAGAGTGGTAAAGTCAATCCAGACTTCCCTTACATGCTTCATCTTGGAATACAGAGCTTTGATTCA
AAGTTTCTCAAAGTATATTCGGAGCTTCAACCAACGCCACTGCAGCTAGAAGAGGATCTAGAGCAGCTCAAAGTCCTTGAAAATGG
CTACAGAATGAAGGTTATAAAGGTGGATCATGAAGCTCATGGAGTTGATACACCTGATGATGTCGAAAAAATCGAATCTTTAATGC
GGGAAAGAAACCTCCTCTAGTCCACATAATACCAGAGATCTTGCTTTCAAACTTTATACATGAAACGCCTTTTCTTGTTTTACTGT
GCGACTTATCAGTCAAATTAGGGACTATAATAGATATGCCTGCAATGTGGTGTGGAACCCAATGGATATTATATTACTTTGTGATT
GAATTCAATTCTTGGCACCACCAGTTAACTTACACCTATTTTTTTTTGTAATTTTATGTAGCAGTACTTGTGTTTGGTTCAGCCAA
GA
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002894417 cytidylyltransferase family [Arabidopsis lyrata subsp. lyrata] | 1391 | 2e-151 |
| NP_175708 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana] | 1382 | 2e-150 |
| XP_002517281 cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] | 1307 | 9e-142 |
| XP_002316900 predicted protein [Populus trichocarpa] | 1291 | 7e-140 |
| XP_002534236 cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] | 1275 | 5e-138 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6MD00 3-deoxy-manno-octulosonate cytidylyltransferase | 567 | 3e-057 |
| Q9PKL1 3-deoxy-manno-octulosonate cytidylyltransferase | 517 | 2e-051 |
| B0B9T2 3-deoxy-manno-octulosonate cytidylyltransferase | 515 | 3e-051 |
| B0BBG2 3-deoxy-manno-octulosonate cytidylyltransferase | 515 | 3e-051 |
| Q3KMI0 3-deoxy-manno-octulosonate cytidylyltransferase | 514 | 4e-051 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C920 AT1G53000 protein | 1382 | 1e-150 |
| B9RU62 Cmp-2-keto-3-deoctulosonate (Cmp-kdo) cytidyltransferase, putative | 1307 | 6e-142 |
| B9HZV4 Predicted protein | 1291 | 4e-140 |
| B9T7L7 Cmp-2-keto-3-deoctulosonate (Cmp-kdo) cytidyltransferase, putative | 1275 | 3e-138 |
| B9N1H9 Predicted protein | 1264 | 6e-137 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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