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Information for unigene UN20933

FASTA Sequence
Unigene ID: UN20933Length: 1608 SSR 
GGAGTGGAAAAAGAAAATCAGTAGAGAAGTCCCTACAAGAATCCTAATTCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACAAAA
ACCACACACACATATAAATATTAGTTAATATTATCTATCACTCGTGTGGTGTCCTCTCTGTCTTCATTCTCTCTTCACTCTGATCT
GAGATTTTGATTCTGCTAAATCATCTTCTCCCAAGAGAGATGGGAATGGAATCACATGCTCCATTGGCGGATCCACACATTGTTGG
GAATGCGTTTGTTCAGAAATACTACAACCACTTGTACGAATCACCAGCACAAGTGCATAGGTTCTATCTTGAGGATAGTGTTTTAG
GGCGACCTGGTTCTGATGGAGAGATGGTTTCTGTCAGCTCCTTAAAAGCTATAAATGAGCAGATCATGTCCTTTGATTACGAGAAC
ACAAAGATTCAGATATTGACTGCTGACTCCCAAGCTTCTTATAAGAGTGGAGTTGTTACTTTGGTCACTGGTTTACTCACCGTGAA
AGATGGGGGAAGGATGAGGTTTTCTCAGTCTTTTTTCCTCGTGCCGCAGAAAGGAAGCTACTTTGTGCTCAACGATGTCTTTAGGT
ATGTCTCTGATGAGCTTGTTGTTAGCCACCAAGAAGAAGTCGAGGAGGTGGTTACTCAAGTAGTCCAAACAACAACAAAAGACACG
ATCTTGGAGCCGGCAAGTGAAGTTGCAGAGCCAGTTACGACCATCCTTACTCAACAGGCAACTGAAACTTTGGCGAAGGAACCAGA
AAGAGCTGGACATCCTAAAACACAAGAGGAAAACGTTGTGGATGCTCCTAAGAAATCATTTGCAGTAATTGTCCAGTCCCCGGCCA
AAGTTGGTGTCAAAGCTTCACCTGCGAAGCCTAGGCCTGTTAAGAAGCCTAGCGCTGCTCCTGAATCCAAAGCTCCTCCCCAACAC
TACTCTTCTGCTGAAGCAGTCAACCAATCAGAGGGTGGTTCCATATTTGTTGCGAACTTGCCTATGGATGCGACACCTGAGCAACT
CAATGAAACATTCAAAGGGTTTGGTGCCATTAGGAAAGATTCTATCCAAGTTAGAAGTTACAGGCTGAAGGGAAACTGTTTCGGCT
TTGTGACATTTGAATCTGCTGAAGCTGTGAAACTGGTCCTCCAGGCTCACAAGGAGTCAGCCATAAGAATCGGAAACAGAAGAGTT
TCTATAGAAGAGAAACGAGGCAACAACGAGAATGGTAGGTCCTCAATGAGAAACGACGGGTTTAGTAGGCCTCGAAGCCATGGAAG
AAATGGATATGAGAGACGGGGAGAATCACGCAATGGTGAGGCCAATAACGATGGTGATGGCAGCAGAGCTTATCAGAACGGTTTGG
TGAAAGCTAACCGTGAAATGCTCAAGCCAGAGCTAAAGAGAGTTTAAAACTCTGTTGCTGTTGTTGTTGTTGTGTTGCTAGCATGT
TCATTGAATTAGATCTGAAGTTGATAGGAATAGAGGGAGAGATCAGAAGTTTTGTTTGGAGTTGGTTTCATCTCTCTTAGGCGATA
CACTCTTTTTTCATTTTTGAGATTTTGTGATTCTAATTCAGTAAGCTTTTATTTGGACCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002890018 nuclear transport factor 2 family protein [Arabidopsis lyrata subsp. lyrata]13554e-147
NP_563932 nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana]13374e-145
XP_002876890 RNA binding protein [Arabidopsis lyrata subsp. lyrata]5704e-056
NP_178462 nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana]5435e-053
NP_001189507 nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana]5435e-053

Swiss-Prot top hits (Blast detail)Scoree value
O94260 Putative G3BP-like protein2323e-018
Q7TN33 CUGBP Elav-like family member 61321e-006
Q96J87 CUGBP Elav-like family member 61302e-006
Q08E07 CUGBP Elav-like family member 31265e-006
Q6CC82 Nuclear transport factor 21265e-006

TrEMBL top hits (Blast detail)Scoree value
Q9LMX6 At1g1373013373e-145
Q8GW56 At2g036405434e-053
Q9ZPR2 Putative uncharacterized protein At2g036405416e-053
B8LK80 Putative uncharacterized protein3803e-034
B9RED0 RNA binding protein, putative3803e-034

Arabidopsis top hits (Blast detail)Scoree value
AT1G13730.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein13372e-147
AT2G03640.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein10217e-111
AT2G03640.2 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein10145e-110
AT3G25150.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein3452e-032
AT5G60980.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein3407e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  20%
 
181  20%
 
123  60%

Unigene MembersMember information