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Information for unigene UN21059

FASTA Sequence
Unigene ID: UN21059Length: 1338  SNP
GGGGGAAGGAGTTATAAAGTAGTCTCCTCTCCTCACTAGGATTTTTTATTGGTGCGAAGAAGGAAAGAGTAGATGGCGCCAGTTAT
TCAGAGCTCACAACCGTGGGTTGAGAAATACCGGCCGAAGCAAGTGAAGGACGTGGCGCATCAGGAGGAGGTGGTTCGAGTACTCA
CCAACACTCTCGAGACTGCTAACTGTCCGCACATGCTCTTTTATGGACCACCAGGAACCGGGAAAACCACTACCGCACTTGCCATC
GCCCACCAGCTATTTGGACCTGAGTTGTACAAGTCTAGGGTGTTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTCG
GACGAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCCAGTAACCGTCAAGGTGGTTATCCTTGCCCATCGTTTAAGATCATTA
TCCTAGATGAGGCTGATTCGATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATTC
TTCTTCATATGTAATTATATCAGCAGGATCATAGAGCCTCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAAGA
AGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCTCAACCTTGGTGGAGAGGCTCTTTCAACTTTAAGCATCATAT
CACAAGGTGATCTCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCAACAATAACTTCTACGGATTTACTC
AATGTGTCTGGGGTTGTCCCTCTGGAGGTAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTGCAAACAAGGA
AGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAAATCATCAATCAGTTATTTGATATAGTCGTTGAGGCTGGTGATGACA
TAACGGACAATCAAAAGGCTAAGATTTGCAAATGTCTAGCTGAAACAGATAAGCGACTTGTAGATGGTGCGGATGAGTACCTGCAG
CTTCTGGACGTGGCAAGCAATACAATTACTGCACTCTCAGAAATGGCTCAAGACTACTAAAAGCAAATACCCTCTTAAAGCTCTGC
ATCTAGTGTTTGAATTTTGGTTTTGCTTTGAAACGGACATCTACGGTATGAATTGTCATAATGACACTTGTCGAGTTATTATTATT
TAATGTTGACAAACAAAAAAAAACTTGGGGGGTTACAACTGAAAAAAAGTTGGGTAGTCAATTGCAGACAGAACCTGATTCTGCTG
TTACCGTTTTGTGTTGTTAGAACAGATGGTTTTTGAATTTAAAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002890453 EMB1968 [Arabidopsis lyrata subsp. lyrata]16261e-178
NP_564148 replication factor C subunit 2/4 [Arabidopsis thaliana]16197e-178
NP_001185060 replication factor C subunit 2/4 [Arabidopsis thaliana]15337e-168
NP_001185061 replication factor C subunit 2/4 [Arabidopsis thaliana]14881e-162
XP_002285874 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]14611e-159

Swiss-Prot top hits (Blast detail)Scoree value
Q99J62 Replication factor C subunit 49161e-097
P35249 Replication factor C subunit 49151e-097
Q54MD4 Probable replication factor C subunit 48756e-093
P40348 Replication factor C subunit 28003e-084
Q09843 Replication factor C subunit 27904e-083

TrEMBL top hits (Blast detail)Scoree value
Q93ZX1 At1g2169016195e-178
A5BRZ3 Putative uncharacterized protein14573e-159
B9S2W1 Replication factor C / DNA polymerase III gamma-tau subunit, putative14564e-159
B9H7I3 Predicted protein14322e-156
Q3ED76 Putative uncharacterized protein At1g21690.214197e-155

Arabidopsis top hits (Blast detail)Scoree value
AT1G21690.1 emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding16202e-180
AT1G21690.2 emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding14203e-157
AT1G63160.1 replication factor C 40 kDa, putative5162e-052
AT1G77470.1 replication factor C 36 kDA, putative5082e-051
AT5G27740.1 EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding1651e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
96  55%
 
85  45%

Unigene MembersMember information