Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN21071

FASTA Sequence
Unigene ID: UN21071Length: 741  SNP
GTCTCTGTAAACATCTGTTGCTTTATCTATTCTCTCTGCGATGGGTCTCCCTACGGATATTAAGGAGCTTGAGATTCCGGATTACA
TACTTAAGATACTTTACGTCATCAGTTTCTTCAGAGACATGATCGACGCTCTCTGTCCTTACATCGGTTTACCCCATTTTTTAGAC
GATGGCGTTCCTCGACCCGGCCCAATCGTACCCGACAACACGGCGTCGACTCTAGCTTACGAGGTTTCCCCGGTTGTTCGTTTCTC
GGATCTTCAGACCGATCTCGACGACTGCTGTACGGTTTGTCTCTCCAACTTTTCATACGATGATAAAGTTAGACAGCTTCCGAACT
GCCGACACGTGTTCCACGACCGCTGCATGGACCGTTGGATCGTTGACTGCCGTAAGATCACTTGTCCCAATTGTCGAGACCGGTTC
TTACCGGCCGAATATTACGCGCGGATAAATTCCGGTTTTGGTTCGGTTTGGTACATGGATGAATCGGAAAGTACTACTATTGCCAT
CTAATCGTGGCCTTCCATTTTTCCTAGTATTTGGTTTTGTTGTAATATTCTCTATAAGACCTTTGCATCTGTTCTTTAGAGATTGG
TATCTGATCAGTATTCTGCGTTTTTTTCAGTATTCTGTGTCAAGTTTTAACTATGTAACAAAAAGTGAAAAGATATCAAACTTTGG
TACATTAGTACGTTGATATAGTAGGACCTGGTCTATATATATAGAAATATACA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAC68670 RING-H2 finger protein RHA1b [Arabidopsis thaliana]5342e-052
NP_192875 E3 ubiquitin-protein ligase RHA1B [Arabidopsis thaliana]5261e-051
XP_002872579 ring-H2 finger protein RHA1b [Arabidopsis lyrata subsp. lyrata]5162e-050
AAC68664 RING-H2 finger protein RHA1a [Arabidopsis thaliana]5126e-050
NP_192876 RING-H2 zinc finger protein RHA1a [Arabidopsis thaliana]5072e-049

Swiss-Prot top hits (Blast detail)Scoree value
Q9SUS5 E3 ubiquitin-protein ligase RHA1B5267e-053
Q9SUS4 RING-H2 zinc finger protein RHA1a5071e-050
Q5XF85 RING-H2 finger protein ATL4J1512e-009
Q9SLC3 RING-H2 finger protein ATL2L1476e-009
Q8GW38 RING-H2 finger protein ATL1D1441e-008

TrEMBL top hits (Blast detail)Scoree value
Q4TU16 RING finger family protein (Fragment)5018e-049
Q9CAJ8 At1g63840/T12P18_142956e-025
B9RCF4 Zinc finger protein, putative2696e-022
Q3YIJ7 At1g63840 (Fragment)2661e-021
Q3YI75 At1g63840-like protein (Fragment)2633e-021

Arabidopsis top hits (Blast detail)Scoree value
AT4G11360.1 RHA1B; protein binding / zinc ion binding5266e-054
AT4G11370.1 RHA1A; protein binding / zinc ion binding5071e-051
AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein2954e-027
AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding1791e-013
AT4G00305.1 zinc finger (C3HC4-type RING finger) family protein1602e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  29%
 
101  14%
 
192  29%
 
182  29%

Unigene MembersMember information