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Information for unigene UN21076
| FASTA Sequence |
| Unigene ID: UN21076 | Length: 1215 |
| SNP | GGAACTCGGACCATCCCATTAACTCCGCTCTCAAATCTCTAGCAGAACCCTTAAACCTTATCCCATCCCGAGAGAGAGAGCCATGT
CTGCCTCCGCTTCTTCCGTTTCCCTCTCTTCCTTCAATCCCAAATCCCTTCTTCCTCTCTGCGTTTCCCGCTCCGCCTCCGTCTTA
CCTCCTTCGCTCTCCTTCAAACTCCACTCCCTCTCTCTCTTCGCTTCCTCCTCCTCACCCGCCCAGTACCCATCTCTCTTCGTCAG
ACACGTCGCCGTATCCTCTGATTTCGAGGTGGAGGAAGACGACATGTTCGCTGACGACGATTCTCCGCCGCCGCAGGAGCGCAGCT
CCTTCTCTGCTGACCTCAAACTCTTCGTCGGTAACCTTTCCTTCGATGTCGATAGCGCCCAGCTCGCTCAACTGTTTGAGAGCGCC
GGTAACGTTGAGATGGTTGAGGTTATCTATGACAAAGTGACTGGCCGAAGCAGAGGTTTTGGGTTTGTGACTATGTCCTCTGCAGC
TGAAGCTGAGGCTGCAGCTCAACAGTTTAATGGCTATGAATTTGAAGGTAGACCCTTGAGGGTTAACGCTGGCCCTCCTCCACCTA
AGAGGGAGGAATCATTCTCCAGAGGACCGAGGAGTGGTGGTTACGGTTCTGAACGTTCCGGTTACGGGTCTCAACGTTCAGGACGT
TCTGGTTACGGTTCTGAGCGTTCTAGCTACGGTTCTGGGTCGGGCTCGGGCTCATCAGACCGTGTTTATGTGGGTAACCTTTCGTG
GGGTGTGGATGACATGGCTCTTGAGAGCTTGTTTAGTGAGCAAGGAAAGGTTGTCGAGGCCAGGGTCATTTACGACAGGGACACTG
GTCGATCCAAGGGTTTTGGGTTTGTCACACTCGGTTCTCCTCAAGAGGTCACAAGAGCCATCAATTCTTTGAATGGAGCTGATTTG
GATGGAAGACAGATTAGAGTCTCGGAGGCGGAGGCTAGACCACCAAGGCGCCAATTTTGAGTGACCACGCAACTTTAATGTTCTGG
AATCTAGAGGTTTAGCTCATCTTGACTGGCGACAAGCTATTTATGTTTTGGGCTTTTGTTTCTTTATTTCACTTTAATTCGTTTTG
GGCTTTGAATGTTTTGCGTTTATCTTTGCCGAGTTTTTGAACATGGACGTCAACAATACCAGAAAATAAATAGATTGCGAAAAAAA
TTTAGTACCAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana] | 865 | 2e-090 |
| NP_190914 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 861 | 5e-090 |
| XP_002877921 hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata] | 857 | 1e-089 |
| BAA06519 RNA-binding protein cp29 [Arabidopsis thaliana] | 845 | 3e-088 |
| NP_001190079 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 829 | 2e-086 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 861 | 2e-091 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 654 | 2e-067 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 436 | 4e-042 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 418 | 5e-040 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 409 | 5e-039 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 658 | 1e-066 |
| Q7GA50 Putative RNA-binding protein | 654 | 3e-066 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 509 | 2e-049 |
| B9MTC6 Predicted protein | 465 | 3e-044 |
| B9IFN7 Predicted protein | 450 | 1e-042 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 861 | 2e-092 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 861 | 2e-092 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 654 | 2e-068 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 289 | 4e-026 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 259 | 1e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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